Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0081 ATGGACTCCTCGTCCGATCGCCGTCTCAAACCGGCGGCCAAGCGAGGCTCTGTCGCCGTGGATCACAGAACGATGAAGAAAAGAAAAGTCGCCGATCGATCGGAGCCGGAGCGGATTGGAAATTCGGCGGGGAATCAAACGCCGACGGAGAAAACCGTTGATAAGGATATAAAACAAGTCCAAGTGGCTGTAAGTTTGATGTGTCATCAGTGCCAGAGGAATGACAAGGGTGGTGTTGTCTTTTGTTCAAGTTGCAACAGAAAACGTTACTGTTATATTTGCATTGACAAGTGGTACCCTGGAAAAACCAGAGAGGAGTTTGAGACTCTGTGTCCATTTTGTTTTGGCAATTGTAACTGCAAAGCTTGCTTGCGCGAGGTTCCTGTGCTAAGGCACCCAGAAGTAGATGCAAGTGTCAAATTACAAAGACTCGTTTACTTGCTATATAAAGCTCTGCCTGTTCTGAGGCATATTCACAGGGAGCAGAGCTTGGAGTTAGAGATTGAATCCAAAAGAACGGATACTCAACTGCAAGAAATTGACATTACAAGGACCAAGCTAGCCGAAAATGAACGCTTGTACTGTGACAATTGCAATACATCAATAATTGGATTTTACCGTAGCTGCCCCAACACCAGTTGCTCTTATGATCTATGTCTCACGTGCTGTCAAGAGCTCCGGGAAGGTTGCCAGCCTGGAGGTGTAGAAGCTGAAGCATCTCATGAACAATTTGCAGAGAGTTTACATAATCATAATTCCAAGAGAGCTAGGAGTAAAACGCCTAGTAAAAGACATGGGTGGGAGAGTGAACTTGCACCTACCGGTTCTGATTTTCAAGCTGACATGTCCTTTCCCCTTCCTGAATGGAAAGCTAATAGTGATGGTAACATTCCATGTCCTCCAAAGCAGTGTGGAGGTTGTGGTACTGCATTGCTAGAGCTGAGACGAATTTACAAAGCTGATTGGGTAGCAAAACTGCTAAATAATGCTGAGGATCTCTCTAGAGATTACATGCCACTGGATGCTGATGTTACTGAAAAGTGTTCTTTATGCCAGCCATATTTGATTGAAGGAAAAACCAATCCTGAAGTCAGGAGGGCAGCATTCCGGGATGACAGTAATGACAACTTCTTATATAGTCCAAATGCCCTAGACATGCCTGATGATGAGATTGAGCACTTCCAGAGGCACTGGATGAAGGGAGAGCCCGTGGTTGTGAGAAATGTTCTGGAAAAGACATCTGGTCTTAGTTGGGAACCAATGGTTATGTGGAGGGCTCTCAGAGAAACAGGTTCTAAAGTGAAGTTCAAAGAGGAAACACGAAGCGTAAAAGCCATTGATTGCTGGGATTGGTGTGGGGTTGAAATTAATATTCACCAATTTTTCCAAGGCTACCTAGAGGGCCGAATGCACAAAAGTAGGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCAACCTCTTTTGAAGAGCGTTTGCCGAGGCATGGTGCTGAGTTTCTTGCTGCACTCCCCTATAGGGACTACACTGATCCCAATTCAGGTCTTTTAAATTTTGCCAGTAAACTTCCTGAAAACTCACTGAAGCCAGATTTGGGACCCAAAACATATATTGCTTATGGATTTTCGGAAGAGCTTGGTAGAGGAGATTCTGTGACAAAACTGCACTGTGATGTATCTGATGCGGTCAATGTGCTGACCCATACAAACAAGGTGAATATACCTTCCTGGCAGAGAAAAAGCATAGACAAATTAAGAAAGGAATTTGATAAAGAAGACTCTTATGAACTTTATGATGAAGCATTAGGTGATGTTGATGGAAGATCTAAATATAAAGCATTGAATCATGATCAAAAGGCAGAAAATGGGGCTAACAGGATTTCACCAAGTAGCCAAATGGATCAGAGCATTTCATCTATTGCTGAAGGCATGAATGGACAGTTAGAAACACGGAACATGGAAAATAGTATTAGCTTAACCTCTACTGAAGTTTCAGATCCTTCCAGGACTTCCGAACTGGAACATGTTCAATCTGCAAGCAGTTCAGCTTCAAGTAATACAAGCAGTAAGGAAGAAAGACCGAGGTTTGATTTTATAGATGATATTGTGTCTGGTGATCCCAAGTTAGAGCCAAAACAAGGCCTGGAGAAAGATTCTCTGGTAAATGAAAATGGAGCTGAGGTTGTGCTTGGTGCTGCTGTCTGGGATATCTTTCGTCGGCAAGACGTTCCAAAGCTAATTGAGTATTTAAGAAAGCACAAGAAGGAATTCCGTCATATCAACAATCAACCTGTGGATTCTGTCATACATCCCATTCATGATCAGACTCTATTCTTAAATGAGAGGCATAAAAAACAGCTTAAAAGGGAGTTCAATATTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTCAGAAATAGACAATCTTGTATAAAGGTTGCGCTTGATTTTGTTTCGCCGGAAAATGTTGAAGAATGTTTACAATTAACTGGAGAGTTTCGTCTGCTCCCGAAAAACCACCGAGCCAAAGAGGATAAATTGGAGGTTAAAAAGATGACCCTTTATGCTGTAAGTAAGGCTGTTAGAGAAGTCAAAGAATTGATGATGGCCAAATGA 2655 0.4267 MDSSSDRRLKPAAKRGSVAVDHRTMKKRKVADRSEPERIGNSAGNQTPTEKTVDKDIKQVQVAVSLMCHQCQRNDKGGVVFCSSCNRKRYCYICIDKWYPGKTREEFETLCPFCFGNCNCKACLREVPVLRHPEVDASVKLQRLVYLLYKALPVLRHIHREQSLELEIESKRTDTQLQEIDITRTKLAENERLYCDNCNTSIIGFYRSCPNTSCSYDLCLTCCQELREGCQPGGVEAEASHEQFAESLHNHNSKRARSKTPSKRHGWESELAPTGSDFQADMSFPLPEWKANSDGNIPCPPKQCGGCGTALLELRRIYKADWVAKLLNNAEDLSRDYMPLDADVTEKCSLCQPYLIEGKTNPEVRRAAFRDDSNDNFLYSPNALDMPDDEIEHFQRHWMKGEPVVVRNVLEKTSGLSWEPMVMWRALRETGSKVKFKEETRSVKAIDCWDWCGVEINIHQFFQGYLEGRMHKSRWPEMLKLKDWPSSTSFEERLPRHGAEFLAALPYRDYTDPNSGLLNFASKLPENSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIPSWQRKSIDKLRKEFDKEDSYELYDEALGDVDGRSKYKALNHDQKAENGANRISPSSQMDQSISSIAEGMNGQLETRNMENSISLTSTEVSDPSRTSELEHVQSASSSASSNTSSKEERPRFDFIDDIVSGDPKLEPKQGLEKDSLVNENGAEVVLGAAVWDIFRRQDVPKLIEYLRKHKKEFRHINNQPVDSVIHPIHDQTLFLNERHKKQLKREFNIEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVEECLQLTGEFRLLPKNHRAKEDKLEVKKMTLYAVSKAVREVKELMMAK* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0081 884 MobiDBLite consensus disorder prediction 660 696 - -
Lja1g0081 884 SMART cupin_9 494 847 IPR003347 -
Lja1g0081 884 MobiDBLite consensus disorder prediction 616 635 - -
Lja1g0081 884 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 23 883 - -
Lja1g0081 884 Pfam JmjC domain, hydroxylase 732 830 IPR003347 -
Lja1g0081 884 ProSiteProfiles Zinc finger RING-type profile. 68 114 IPR001841 -
Lja1g0081 884 MobiDBLite consensus disorder prediction 248 272 - -
Lja1g0081 884 MobiDBLite consensus disorder prediction 660 690 - -
Lja1g0081 884 MobiDBLite consensus disorder prediction 1 36 - -
Lja1g0081 884 ProSiteProfiles JmjC domain profile. 513 847 IPR003347 -
Lja1g0081 884 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 23 883 IPR045109 GO:0032454|GO:0033169
Lja1g0081 884 MobiDBLite consensus disorder prediction 1 53 - -
Lja1g0081 884 SUPERFAMILY Clavaminate synthase-like 391 866 - -
Lja1g0081 884 Gene3D Cupin 382 634 - -
Lja1g0081 884 Gene3D Cupin 651 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0081 Lja-Chr1 685874 695744 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja1g0081 JmjC 7.5e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0081 K15601 - vvi:100258626 1046.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0081 1 685874 695744 Lja1g0081 1 685874 695744 ECH