Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0080 ATGGAAGCCGAAACTCGACGGAAAATCGAGGAAACTGTGTTGGATATACTCAAGAAATCCAATATCGAACAAACCACTGAGTTCACCATCCGAGTCGCTGCCTCCGACCAACTCGGCATCGACCTCTCCGCGCCGGAGACCAAGCAACTCGTTAGAAACGTCGTCGAGTCGTATCTTCTCACTGTCGCCGCCGCCGATGGTAAACCGCCGCAAGAAGAGTCTAGAGACGACGTGCAACCCAACAGGGAGATGAAGAAGGAGAAGGAGGATTCAGAACGCGTTATTTGCCAGCTATCAAACAGGAGGAATGTGGTGGTTCAAGATTTCAGAGGGACTACACTGGTGTCAATTAGGGAGTTCTATCATAAAGACGGAAAACAGCTCCCTGGTCCTAAAGGGATAAGTTTATCTACTGAACAATGGTCAACCTTCAAGAACAGTGTTCCCGCCATAGAGGAAGCTATCAGGAAGATGGAAGGAAGGATAAGACCAGAGCTTAATGGTGAGAAAAATGGAGATGCAGCAAATTCAGTTGTTGATGTTGCTCCTCTTGAGCTTGTCCCTATCGAGATCATCCGGTTTGACGGGAGGAATTACCAATTTTGGGCTCAACAGATGGAATTACTCTTGAAACAGTTAAAGATTCACCATGTGCTTGTGGAACTATGCCCAAATGCTACATTACGAGAAGATGCAAGTGGTGAAGAAATTGCACAAGCCAAAGCTGCTGAAAAGAGATGGGTAAATGATGACCTAATGTGTCGTCGCAACATCTTGAGCCACTTATCTGATCATCTTTTCAATCAGTATGTGAACAGAAAAATGAGCGCGAAGGAGTTATGGGAAGAGTTAGATTTGGTTTATCGGTATGAGGAATATGGAACAAAGAGATCTCAGGTGAAAAGGTATATTGAATTTCAGATGGTTGATGAGAAAGCGGTTGTTGACCAAATTCGAGAATTGAATAGCATTGCAGATTCTATTGTTGCTGCTGGAATCTCTATTGAAGAGAACTTTCATGTTAGTGTCATCATTTCAAAGCTTCCACCGTCCTGGAAAGGATTCAGCATCAAGTTAATGCGTGAGGAGTATCTACCTTTCTGGAATTTAATGGAACATATAAGAATAGAAGAAGAATCTCGCAATGGAGTCAAACATGTGGGTGAACATTTTAATAGTGTAAGATATCATCAGGCCAATACAAGTGGACACAGGGCTGCTGACAATAGGCCACATGGTATGTATAGGAATAAGTTAGAACAAAATACCAAGGGCATAGCCTGTAATGTTTGTGGCAAGAAGGGGCATCTTTCTAAATACTGCTGGAGAAGATGTGAGAAGCAAGCCAATGAAAGGAAAGCAGTGGAGGATGATATGCGAATACCTACAGCTGGTAATACGCCTGGGGTTGAGTAA 1416 0.435 MEAETRRKIEETVLDILKKSNIEQTTEFTIRVAASDQLGIDLSAPETKQLVRNVVESYLLTVAAADGKPPQEESRDDVQPNREMKKEKEDSERVICQLSNRRNVVVQDFRGTTLVSIREFYHKDGKQLPGPKGISLSTEQWSTFKNSVPAIEEAIRKMEGRIRPELNGEKNGDAANSVVDVAPLELVPIEIIRFDGRNYQFWAQQMELLLKQLKIHHVLVELCPNATLREDASGEEIAQAKAAEKRWVNDDLMCRRNILSHLSDHLFNQYVNRKMSAKELWEELDLVYRYEEYGTKRSQVKRYIEFQMVDEKAVVDQIRELNSIADSIVAAGISIEENFHVSVIISKLPPSWKGFSIKLMREEYLPFWNLMEHIRIEEESRNGVKHVGEHFNSVRYHQANTSGHRAADNRPHGMYRNKLEQNTKGIACNVCGKKGHLSKYCWRRCEKQANERKAVEDDMRIPTAGNTPGVE* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0080 471 Pfam Transcriptional Coactivator p15 (PC4) 96 146 IPR003173 GO:0003677|GO:0006355
Lja1g0080 471 SUPERFAMILY ssDNA-binding transcriptional regulator domain 95 157 IPR009044 GO:0003677|GO:0006355
Lja1g0080 471 PANTHER PBF68 PROTEIN 1 463 - -
Lja1g0080 471 Pfam gag-polypeptide of LTR copia-type 247 382 - -
Lja1g0080 471 Pfam DEK C terminal domain 5 59 IPR014876 -
Lja1g0080 471 ProSiteProfiles Zinc finger CCHC-type profile. 428 441 IPR001878 GO:0003676|GO:0008270
Lja1g0080 471 PANTHER PBF68 PROTEIN 1 463 - -
Lja1g0080 471 MobiDBLite consensus disorder prediction 65 91 - -
Lja1g0080 471 Gene3D Transcriptional Coactivator Pc4; Chain A 85 163 IPR009044 GO:0003677|GO:0006355
Lja1g0080 471 MobiDBLite consensus disorder prediction 69 91 - -
Lja1g0080 471 MobiDBLite consensus disorder prediction 452 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0080 Lja-Chr1 680940 684182 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Lja1g0080 Retrotran_gag_2 4.7e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0080 - - lja:Lj1g3v5035030.1 644.425