Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0078 ATGGACCAACAACCACCACCGTGCCCCGACGATAATGTGACCGCCTCAGCCGCTGTGAGAGGCGGCACGCGCCACCCGGTGTACCGCGGAGTACGGAAACGGCGGTGGGGCAGGTGGGTGTCAGAAATTAGGGAGCCACGGAAGAAATCGAGGATATGGTTGGGGTCGTTCCCGGTGCCGGAGATGGCGGCGAAGGCATACGACGTTGCCGCGTACTGCCTCAAAGGGCGGAAGGCGCAGCTCAACTTTCCCGACGAGGTGGACCGACTGCCGGTTCCGGCTACCTGCACGGCCAGAGACATTCAGGCGGCTGCGGCTAAGGCGGCGAGCATGATGTCGAAAGCCGCCGGTGAGAAAAGCAGCATTGCGACCGACGGAGACATCGGAGGCGGCGATGATTTCTGGGGTGAGATTGAGTTGCCGGAGCTAATGTGTTGCTGGAGTTCTCCGAGCGGGTCATCGTGGAATTCCTCCGGTGACACCACGGCGTGGCCGGAGGTTGAGCTTTTGCCGCTGCAACCCTTCATGGCGTGTCTATAA 540 0.6167 MDQQPPPCPDDNVTASAAVRGGTRHPVYRGVRKRRWGRWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFPDEVDRLPVPATCTARDIQAAAAKAASMMSKAAGEKSSIATDGDIGGGDDFWGEIELPELMCCWSSPSGSSWNSSGDTTAWPEVELLPLQPFMACL* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0078 179 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Lja1g0078 179 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Lja1g0078 179 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Lja1g0078 179 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Lja1g0078 179 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Lja1g0078 179 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Lja1g0078 179 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g0078 179 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Lja1g0078 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 179 - -
Lja1g0078 179 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 179 - -
Lja1g0078 179 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0078 Lja-Chr1 658829 661305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0078 1 179 AP2-EREBP Transcription Factor Family AT1G01250 57.436 7.59e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g0078 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0078 K09286 - gmx:100819971 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0078 1 658829 661305 Lja1g0078 1 658829 661305 ECH
Lja1g0078 1 658829 661305 Lja3g1758 3 19685132 19685971 PCT