Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0077 ATGGCACATCTGAAGGGTGCTCATCTCAGAGGCACGACGGAGGAAACAGGTTTGGGAGATGATGATCAGTTGGATACAGAGCTATGGAAGCTCTGTGCAGGGCCTCTGGTGGATGTTCCTCGTTCTGGGGAGAGAGTTTTCTACTTCCCTCAGGGCCACATGGAACAATTGCAAGCATCAACTAATCAGGAAGGGAACCTGGACTTAAACCAGCAATTCCCTCATTTCAATCTCCCATCCAAGATTCTCTGCCGCGTTGTGCACATTCAGTTGTTGGCGGAACAGGAATCCGATGAAGTTTATGCTCGTATCACTTTAATTCCAGAATCAAATCAAAGTGAGCCGACATGTCCTGACTCAACTCAACCAGAGACCCAAAAACATAAGTTTCACTCTTTTAGCAAGATATTAACTGCCTCTGATACTAGCACTCATGGAGGATTTTCAGTTCTGCGGAGGCATGCTACCGAGTGCCTACCTCAATTGGACATGACTCAAGCAATCCCAACTCAGGAATTGGCAGCTAAGGATCTTCATGGTTTTGAGTGGAAATTTAAGCATATATTCAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGCTGGAGCACATTTGTCACATCCAAAAGACTGGTTGCTGGAGATGCCTTTGTGTTTTTAAGGGGAGAGAACGGCGATCTGAGAGTCGGTGTTAGGCGTCTTGCCCGGCAGCAAAGTCCTATGCCTTCATCAGTAATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTTTGACTTGTACCATGTTTGTGGTTTATTACAAACCTAGGACTAGCCAGTTCATTATTGGTGTGAACAAATACCTGGAGGCTTTGACCAATAAGTTTTCAGTTGGAATGCGTTTCAAGATGAGGTTTGAAGTGGAAGATTCACCTGAGAGAAGGTTTTCTGGTACTATTGTTGATGTTGGGGATGTATCTCCAGGATGGTCAAACTCTCAGTGGCGTTCCTTGAAGGTTCAATGGGATGAGCCAGCATCAATTCCAAGGCCAGAGAGGGTTTCCTCATGGGAGATAGAGCCTTTTGTTGCTTCTACTACTTCAAATGTCACCGAACCATTGGTAAAGAGTAAAAGGACTAGGCCTCCTGAGGTTTCATCTTCTGAAATTGCTCTCAATTCTCCTTTTTCAACTTTCTGGTATCATGGACCATCCTTATCCCATGAGCCCACACAATTAGGTGGTGCTGCAGAACCCGAAAACAACGAAAACCGGGTTGTACGGTCTTTGAAGGGACAGAGAGAAATTAATGGCAATCCACATTTGAATCTCTCTTCAAACTTTATTAATCCTGAACCCAAAAACAACAAAGATGTTGCAGCATTATCATCTGCCTGTGGTTATTATCCTGTTTCATCTAGGCCAAATGATGGTTCAGCACATGATCAAGTGGAAAGTGGTAAAAAGACAGAGAATTCCATGGATTGCTGGGTATTTGGAGTTAATTTGACTACCACCTTTCCTAATGTTGACAAAGAACTGGGATGTCAAGTTATTATTCCTAGTGGTCCCAATGATCCTCTTCCTATTGCTGCATGTGAAACTGAAACTGAGGGTGGTCACAATCCCAATTATTCAGTGTCCAATAAGGAGCAGAAGCAAATTATTTCTGATGCTTCACTCAATGAGAGGCAGAACAAGCAGGTCTCTATACCATCCTTGAGGACTAGGACTAAGGTGCAAATGCAAGGCATTGCTGTTGGTCGTGCTGTTGACTTGACCATGTTGAAAGATTATGATGACCTCATAGATGAGCTTGAGAAGTTGTTTGATATTAAGGGAGAGCTTCGAGTGCAAAACAAATGGAATATAGCTTTTACTGATTATGCAAATGATATGATGCTTGTTGGTGATCATCCATGGCAGGAATTTTGTACCATTGTGAAGAGGATTTCCATTTATGCAAGGGAAGATGTGAAAATGAAATGCAAGCATTCTGGTTCTTGGTCTGAATGTGAAGAGACTTTGTTGAGCCAAGATTCACAGACCATATAA 2052 0.4337 MAHLKGAHLRGTTEETGLGDDDQLDTELWKLCAGPLVDVPRSGERVFYFPQGHMEQLQASTNQEGNLDLNQQFPHFNLPSKILCRVVHIQLLAEQESDEVYARITLIPESNQSEPTCPDSTQPETQKHKFHSFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQAIPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGDLRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVLTCTMFVVYYKPRTSQFIIGVNKYLEALTNKFSVGMRFKMRFEVEDSPERRFSGTIVDVGDVSPGWSNSQWRSLKVQWDEPASIPRPERVSSWEIEPFVASTTSNVTEPLVKSKRTRPPEVSSSEIALNSPFSTFWYHGPSLSHEPTQLGGAAEPENNENRVVRSLKGQREINGNPHLNLSSNFINPEPKNNKDVAALSSACGYYPVSSRPNDGSAHDQVESGKKTENSMDCWVFGVNLTTTFPNVDKELGCQVIIPSGPNDPLPIAACETETEGGHNPNYSVSNKEQKQIISDASLNERQNKQVSIPSLRTRTKVQMQGIAVGRAVDLTMLKDYDDLIDELEKLFDIKGELRVQNKWNIAFTDYANDMMLVGDHPWQEFCTIVKRISIYAREDVKMKCKHSGSWSECEETLLSQDSQTI* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0077 683 Pfam B3 DNA binding domain 133 233 IPR003340 GO:0003677
Lja1g0077 683 Gene3D - 130 234 IPR015300 -
Lja1g0077 683 CDD B3_DNA 131 233 IPR003340 GO:0003677
Lja1g0077 683 PANTHER AUXIN RESPONSE FACTOR 11 14 664 - -
Lja1g0077 683 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 664 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja1g0077 683 SUPERFAMILY CAD & PB1 domains 573 652 - -
Lja1g0077 683 SUPERFAMILY DNA-binding pseudobarrel domain 124 262 IPR015300 -
Lja1g0077 683 ProSiteProfiles PB1 domain profile. 574 655 IPR000270 GO:0005515
Lja1g0077 683 Pfam Auxin response factor 259 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja1g0077 683 Gene3D - 570 661 - -
Lja1g0077 683 SMART B3_2 133 235 IPR003340 GO:0003677
Lja1g0077 683 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Lja1g0077 683 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g0077 683 Gene3D - 294 367 - -
Lja1g0077 683 Pfam AUX/IAA family 571 654 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0077 Lja-Chr1 646503 651063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0077 24 659 B3 DNA Binding Superfamily AT4G23980 56.143 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja1g0077 B3 1e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0077 K14486 - gmx:100820503 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0077 1 646503 651063 Lja1g0077 1 646503 651063 ECH