Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0069 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGGCTACACAGAGGTCCATGGCTTCCTCGTGAAGATGCACTTCTCACCAAATATATTCGAGATCATGGAGAAGGACAGTGGAGATCATTACCAAAAAGAACTGGGCTTCTAAGATGCGGAAAGAGTTGCAGATTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGTAACATAACTCCTGATGAAGATGACCTTATAATCAGAATGCATTCTCTTCTTGGAAATAGATGGTCACTCATTGCAGGAAGAATACCCGGGCGAACAGATAATGAGATAAAGAACTACTGGAATACCCACCTCTGCAAAAAGCTCAGAAATCAAGAGGCAGAGGCAGAGAAGAAAAGAGAAGAGTCAGAGTCAGAGAGAAACAGAGCAGAGTCAGAGAAGAAGATCTTAGTTTATCTACCAAAACCCACAAGGGTAACATCTCTATCCTCCATTCCCAGAACGGATAGCACATTGACATTGAATTCCATTAATTCATTCAGTGCTGCAGCATCAACAAGCAAAGAGAAAGAAAAAGAGGTGAACTTGGAGGGAGAAAATAAAAATGATGATAATGGGTTTGGATTCTTTGGTGAAATGGAATGCTCCTCTGTTATTCCAGATCATGGGACACTTGAGAAGGTGTATGAAGAGTACTTGCAGCTCTTGAAGGTTGAAGAGAACCATGATGATGATTTAGATTCTTTTGCTGAATCGTTGTTAGCGTAA 750 0.4093 MGRAPCCSKVGLHRGPWLPREDALLTKYIRDHGEGQWRSLPKRTGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRMHSLLGNRWSLIAGRIPGRTDNEIKNYWNTHLCKKLRNQEAEAEKKREESESERNRAESEKKILVYLPKPTRVTSLSSIPRTDSTLTLNSINSFSAAASTSKEKEKEVNLEGENKNDDNGFGFFGEMECSSVIPDHGTLEKVYEEYLQLLKVEENHDDDLDSFAESLLA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0069 249 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja1g0069 249 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g0069 249 CDD SANT 16 61 IPR001005 -
Lja1g0069 249 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja1g0069 249 PANTHER MYB TRANSCRIPTION FACTOR 124 237 - -
Lja1g0069 249 PANTHER MYB TRANSCRIPTION FACTOR 1 136 - -
Lja1g0069 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja1g0069 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja1g0069 249 Gene3D - 71 144 - -
Lja1g0069 249 Coils Coil 109 140 - -
Lja1g0069 249 SMART sant 13 63 IPR001005 -
Lja1g0069 249 SMART sant 66 114 IPR001005 -
Lja1g0069 249 CDD SANT 71 112 IPR001005 -
Lja1g0069 249 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 124 237 - -
Lja1g0069 249 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g0069 249 Gene3D - 14 66 - -
Lja1g0069 249 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g0069 249 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0069 Lja-Chr1 611751 613099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0069 4 176 MYB Transcription Factor Family AT3G13540 55.307 8.09e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g0069 Myb_DNA-binding 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0069 K09422 - gmx:778044 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0069 1 611751 613099 Lja1g0069 1 611751 613099 ECH
Lja1g0069 1 611751 613099 Lja3g1740 3 19448276 19449802 PCT