Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja1g0064 | ATGCTTGGCTATGGCATTCACAATCTCAGATCTCAATTTTGGATTAAAACCCTTAAATTGCAATCATCGTTTTCTTCCTCATTCAACGCCTCTAAAGCTTCATGTGCATCAGCCCTCACATATAATGCAGGTTTTGCATTTGTTTATTTTGAGGAAGAGCGAGATGCTGAGGATGCAATTCGTGCACTTGACAATTTTCCATTTGGATATGAAAAGCGAAGGCTTTCAGTGGAGTGGGCTAGGGGTGAACGTGGCCGTGGTCGAGATGGCCCAAGGACAAACCAGAAGCCTACAAAGACCTTATTTGTGATTAATTTTGACCCAATTCGTACTAGAGTCCAAGATATCGAAAGACACTTCGAGCCTTATGGGAAGGTTGTTCATGTTCGAATTCGTAGGAACTTTGCATTTGTGCAATTTGAAACACAAGAAGATGCTACTAAAGCTCTCGAGTGTACTCATATGAGTAAGGTACTGGACAGAGTGGTCTCTGTGGAGTATTCTCTCAGGGATGATGATGAGAAGGGTGACAGATATAACAGTCCTAGAAGAGGAGGGGGTTATGGAAGATCGCGCAGTCCAGTTTATCGTAGGCGATCTAGCCCTGACTATGGACGTCCACGCAGCCCTGTGTATGACAGGTACAATGGACCGGGCTATGACAAACGCAGGAGCCCTGATTATGGTAGGCCTAGGAGCCCTGATCTTGGCAGGCACAGGAGTCCTGAATATGGTAGATATCGCAGTCGCTCACCGATCCGGAGGCCATGA | 771 | 0.4604 | MLGYGIHNLRSQFWIKTLKLQSSFSSSFNASKASCASALTYNAGFAFVYFEEERDAEDAIRALDNFPFGYEKRRLSVEWARGERGRGRDGPRTNQKPTKTLFVINFDPIRTRVQDIERHFEPYGKVVHVRIRRNFAFVQFETQEDATKALECTHMSKVLDRVVSVEYSLRDDDEKGDRYNSPRRGGGYGRSRSPVYRRRSSPDYGRPRSPVYDRYNGPGYDKRRSPDYGRPRSPDLGRHRSPEYGRYRSRSPIRRP* | 257 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja1g0064 | 256 | Gene3D | - | 94 | 181 | IPR012677 | - | |
Lja1g0064 | 256 | Gene3D | - | 31 | 93 | IPR012677 | - | |
Lja1g0064 | 256 | MobiDBLite | consensus disorder prediction | 217 | 250 | - | - | |
Lja1g0064 | 256 | CDD | RRM2_AtRSp31_like | 100 | 169 | - | - | |
Lja1g0064 | 256 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 99 | 170 | IPR000504 | GO:0003723 | |
Lja1g0064 | 256 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 11 | 82 | IPR000504 | GO:0003723 | |
Lja1g0064 | 256 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 32 | 210 | - | - | |
Lja1g0064 | 256 | MobiDBLite | consensus disorder prediction | 171 | 256 | - | - | |
Lja1g0064 | 256 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 101 | 163 | IPR000504 | GO:0003723 | |
Lja1g0064 | 256 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 42 | 68 | IPR000504 | GO:0003723 | |
Lja1g0064 | 256 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED | 32 | 210 | IPR029537 | GO:0000398|GO:0005681 | |
Lja1g0064 | 256 | SUPERFAMILY | RNA-binding domain, RBD | 42 | 173 | IPR035979 | GO:0003676 | |
Lja1g0064 | 256 | SMART | rrm1_1 | 100 | 166 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja1g0064 | Lja-Chr1 | 576263 | 578354 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja1g0064 | 44 | 176 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 24.490 | 6.09e-06 | 45.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja1g0064 | K12893 | - | gmx:100797709 | 320.472 |