Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0064 ATGCTTGGCTATGGCATTCACAATCTCAGATCTCAATTTTGGATTAAAACCCTTAAATTGCAATCATCGTTTTCTTCCTCATTCAACGCCTCTAAAGCTTCATGTGCATCAGCCCTCACATATAATGCAGGTTTTGCATTTGTTTATTTTGAGGAAGAGCGAGATGCTGAGGATGCAATTCGTGCACTTGACAATTTTCCATTTGGATATGAAAAGCGAAGGCTTTCAGTGGAGTGGGCTAGGGGTGAACGTGGCCGTGGTCGAGATGGCCCAAGGACAAACCAGAAGCCTACAAAGACCTTATTTGTGATTAATTTTGACCCAATTCGTACTAGAGTCCAAGATATCGAAAGACACTTCGAGCCTTATGGGAAGGTTGTTCATGTTCGAATTCGTAGGAACTTTGCATTTGTGCAATTTGAAACACAAGAAGATGCTACTAAAGCTCTCGAGTGTACTCATATGAGTAAGGTACTGGACAGAGTGGTCTCTGTGGAGTATTCTCTCAGGGATGATGATGAGAAGGGTGACAGATATAACAGTCCTAGAAGAGGAGGGGGTTATGGAAGATCGCGCAGTCCAGTTTATCGTAGGCGATCTAGCCCTGACTATGGACGTCCACGCAGCCCTGTGTATGACAGGTACAATGGACCGGGCTATGACAAACGCAGGAGCCCTGATTATGGTAGGCCTAGGAGCCCTGATCTTGGCAGGCACAGGAGTCCTGAATATGGTAGATATCGCAGTCGCTCACCGATCCGGAGGCCATGA 771 0.4604 MLGYGIHNLRSQFWIKTLKLQSSFSSSFNASKASCASALTYNAGFAFVYFEEERDAEDAIRALDNFPFGYEKRRLSVEWARGERGRGRDGPRTNQKPTKTLFVINFDPIRTRVQDIERHFEPYGKVVHVRIRRNFAFVQFETQEDATKALECTHMSKVLDRVVSVEYSLRDDDEKGDRYNSPRRGGGYGRSRSPVYRRRSSPDYGRPRSPVYDRYNGPGYDKRRSPDYGRPRSPDLGRHRSPEYGRYRSRSPIRRP* 257
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0064 256 Gene3D - 94 181 IPR012677 -
Lja1g0064 256 Gene3D - 31 93 IPR012677 -
Lja1g0064 256 MobiDBLite consensus disorder prediction 217 250 - -
Lja1g0064 256 CDD RRM2_AtRSp31_like 100 169 - -
Lja1g0064 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 170 IPR000504 GO:0003723
Lja1g0064 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 82 IPR000504 GO:0003723
Lja1g0064 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 32 210 - -
Lja1g0064 256 MobiDBLite consensus disorder prediction 171 256 - -
Lja1g0064 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 163 IPR000504 GO:0003723
Lja1g0064 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 68 IPR000504 GO:0003723
Lja1g0064 256 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 32 210 IPR029537 GO:0000398|GO:0005681
Lja1g0064 256 SUPERFAMILY RNA-binding domain, RBD 42 173 IPR035979 GO:0003676
Lja1g0064 256 SMART rrm1_1 100 166 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja1g0064 Lja-Chr1 576263 578354 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0064 44 176 Eukaryotic Initiation Factors Gene Family AT1G49760 24.490 6.09e-06 45.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0064 K12893 - gmx:100797709 320.472
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0064 1 576263 578354 Lja1g0064 1 576263 578354 ECH