Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0056 ATGTTGGGAAAAAGTATTCAGCTGACATATCATCACCATGGAAGGACCAAAGAAATTCCAAAAGGGTGGTTGGCAATCAAGGTGGGTCAAGGCCAAGAGCAACAGAGGATTACAGTACCTTTGATTTACCTCAACCACCCCCTGTTTGTTCAGCTGCTGAAGGAGGCAGAGGAAGAGTTCGGTTTTGCTCAGAAGGGAACCATAGTTCTCCCTTGTCATGTGGCGGAGTTTAAGCATATTCAACACCTGATTGATAGTGAGAGAAAGCCCCTCCACCACCACCATCAACCTCACCACCTTGTTGGCTGCTTCAGGGCTTGA 321 0.4766 MLGKSIQLTYHHHGRTKEIPKGWLAIKVGQGQEQQRITVPLIYLNHPLFVQLLKEAEEEFGFAQKGTIVLPCHVAEFKHIQHLIDSERKPLHHHHQPHHLVGCFRA* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0056 106 Pfam Auxin responsive protein 14 83 IPR003676 GO:0009733
Lja1g0056 106 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 11 100 - -
Lja1g0056 106 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 11 100 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0056 Lja-Chr1 533342 534386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0056 16 88 Calmodulin-binding Proteins AT4G31320 46.575 7.34e-17 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0056 K14488 - pop:7486796 133.265