Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0055 ATGGGTGGTGGGGAGAAGAGTGCTCTCAAGGGTTTCAATTTGCATCGCCACCACCACCATGGCCAGGGGAAGAAGCAAGAGACCAGCGTGCCAAAAGGGTGTATGGCAGTGAAGGTGGGTCAAGGCGAAGAGAAACAGAGGTTCGTGGTGCCGGTGATGTACTTCAATCACCCTTTGTTCATGCAGCTGCTGAAGGAGGCGGAGGAAGAATACGGGTTTGATCAGAAGGGAACAATCACCATCCCTTGTCATGTCGAGGAATTCAGGAATGTTCGAGGTTTGATTGATAGGGAAAAGTCTCTCAACCACCACCACCATCATGTTGGCTGTTTTGGCTTCTGA 342 0.5088 MGGGEKSALKGFNLHRHHHHGQGKKQETSVPKGCMAVKVGQGEEKQRFVVPVMYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNVRGLIDREKSLNHHHHHVGCFGF* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0055 113 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g0055 113 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 20 108 IPR003676 GO:0009733
Lja1g0055 113 PANTHER SMALL AUXIN-UP RNA-RELATED 20 108 - -
Lja1g0055 113 Pfam Auxin responsive protein 22 91 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0055 Lja-Chr1 527286 528271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0055 29 89 Calmodulin-binding Proteins AT5G20810 55.738 4.32e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0055 K14488 - gmx:111188139 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0055 1 527286 528271 Lja1g0055 1 527286 528271 ECH
Lja3g1720 3 19152549 19153142 Lja1g0055 1 527286 528271 ECH
Lja1g0055 1 527286 528271 Lja3g1720 3 19152549 19153142 PCT