Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0054 ATGGGCCAGTGTTATGGGAAGACCAATCCCACGGCGGAGAACGACCATGACCCCAACACAACCACCATCATTTCCTCCGCCGGAGACGCCGCCCGTTCCCCGGCTCCCTCCGCTGCGAATGGGTTCCCGTCGGTCAAGAGCACGCCGGCTCGGAATTCCTCCACGCACCCCAGCCCCTGGCCGAGCCCCTACCCTCACGGCGTGAACCCGAGCCCATCGCCGGCGAGGGCCTCGACGCCGAGGAGATTCTTCCGGCGTCCGTTTCCTCCGCCGTCGCCTGCGAAGCACATAAGGGCATCTCTGGCGAAGAGGCTGGGGCAGGCGAAGCCCAAGGAGGGGCCAATCCCGGAGGATCGCGGGGCGGAGCCGGAGCAGGCTCTGGACAAGAGCTTTGGGTACAGCAAGAGTTTTGGAGCTAAGTATGAGCTGGGGAAGGAGGTGGGTCGAGGGCATTTCGGTCATACCTGCTCTGCAAGGGGAAAGAAGGGTGAACTCAAAGACCAACCTCTTGCTGTTAAAATCATTTCCAAGGCCAAGATGACCACGGCTATAGCAATTGAAGATGTTCGTAGAGAGGTGAAGCTGTTAAAAGCTCTGTCTGGCCATAAGCATCTTGTCAGATTTTATGATGCCTGCGAGGATGCCAATAATGTGTACATAGTTATGGAATTGTGTGAAGGGGGAGAGCTTCTTGACCGAATTTTGTCAAGGGGAGGAAGGTATACAGAGGAGGATGCGAAAGTTATAATTTTGCAGATTCTAAGTGTAGTTGCCTTTTGTCATGTTCAAGGTGTTGTGCACCGCGACCTGAAACCCGAGAATTTCCTCTTCACTTCAAGAAGTGAAGATGCTGACATGAAGCTTATCGATTTTGGTTTATCTGACTTCATCAGGCCAGATGAACGGTTGAATGACATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCTTATAGCGTGGAAGCAGATATATGGAGTATTGGGGTTATTACCTATATCTTATTATGTGGAAGCCGGCCTTTCTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTTCTGAGAGCTGATCCTAACTTTGATGATTTACCTTGGCCATCTGTAACTCCAGAGGCCAAGGACTTTGTCAAAAGGCTCCTAAACAAGGACTACAGGAAGAGAATGACTGCTGCCCAAGCTCTAACTCACCCTTGGTTGAGAGATGACAGCCGCCCTATCCCTTTAGATATATTAATTTATAAGCTGGTGAAGTCTTATCTTCATGCGACGCCATTCAAACGTGCAGCAGTAAAGGCCCTTTCAAAAGCCTTGACAGAGGAACAGTTGGTGTATCTTAGGGCGCAGTTCAGATTATTGGAACCTAATAGAGATGGGCACATCTCCCTTGATAATTTCAAAATGGCCCTTGCACGTCATGCAACTGATGCCATGAGGGAGTCAAGGGTTCTTGATATCATACATATGATGGAACCACTTGCCTATAGAAAGATGGATTTTGAAGAATTTTGTGCAGCTGCAACTAGCACATATCAATTGGAGGCACTTGATAGGTGGGAAGACATTGCCAGTGCTGCTTTTGAGCATTTTGAGAGAGAGGGCAACCGTGTGATATCGATTGAAGAATTAGCAAGAGAGTTGAATCTTGGTCCTTCAGCTTATTCAATTCTGAGAGATTGGATACGCAGCAGTGATGGGAAGCTTAATTTACTTGGATACACAAAATTTTTGCATGGCGTGACTCTCCGGTCTCCAGTCCCAAGACCCCGTTAG 1782 0.4927 MGQCYGKTNPTAENDHDPNTTTIISSAGDAARSPAPSAANGFPSVKSTPARNSSTHPSPWPSPYPHGVNPSPSPARASTPRRFFRRPFPPPSPAKHIRASLAKRLGQAKPKEGPIPEDRGAEPEQALDKSFGYSKSFGAKYELGKEVGRGHFGHTCSARGKKGELKDQPLAVKIISKAKMTTAIAIEDVRREVKLLKALSGHKHLVRFYDACEDANNVYIVMELCEGGELLDRILSRGGRYTEEDAKVIILQILSVVAFCHVQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRADPNFDDLPWPSVTPEAKDFVKRLLNKDYRKRMTAAQALTHPWLRDDSRPIPLDILIYKLVKSYLHATPFKRAAVKALSKALTEEQLVYLRAQFRLLEPNRDGHISLDNFKMALARHATDAMRESRVLDIIHMMEPLAYRKMDFEEFCAAATSTYQLEALDRWEDIASAAFEHFEREGNRVISIEELARELNLGPSAYSILRDWIRSSDGKLNLLGYTKFLHGVTLRSPVPRPR* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0054 593 PANTHER CDPK-RELATED KINASE 3 56 586 - -
Lja1g0054 593 SUPERFAMILY Protein kinase-like (PK-like) 140 426 IPR011009 -
Lja1g0054 593 ProSitePatterns Protein kinases ATP-binding region signature. 147 173 IPR017441 GO:0005524
Lja1g0054 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Lja1g0054 593 Gene3D - 412 583 - -
Lja1g0054 593 ProSiteProfiles Protein kinase domain profile. 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0054 593 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Lja1g0054 593 MobiDBLite consensus disorder prediction 1 126 - -
Lja1g0054 593 MobiDBLite consensus disorder prediction 1 28 - -
Lja1g0054 593 SMART serkin_6 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0054 593 MobiDBLite consensus disorder prediction 56 70 - -
Lja1g0054 593 CDD STKc_CAMK 140 402 - -
Lja1g0054 593 Gene3D Transferase(Phosphotransferase) domain 1 230 411 - -
Lja1g0054 593 MobiDBLite consensus disorder prediction 110 125 - -
Lja1g0054 593 SUPERFAMILY EF-hand 429 582 IPR011992 -
Lja1g0054 593 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 586 - -
Lja1g0054 593 MobiDBLite consensus disorder prediction 40 55 - -
Lja1g0054 593 Gene3D Phosphorylase Kinase; domain 1 134 229 - -
Lja1g0054 593 Pfam Protein kinase domain 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0054 Lja-Chr1 519449 526196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0054 1 587 EF-hand Containing Proteins AT3G50530 58.723 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja1g0054 Pkinase 7.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0054 - - qsu:111993273 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0054 1 519449 526196 Lja1g0054 1 519449 526196 ECH
Lja3g1715 3 19088206 19100266 Lja1g0054 1 519449 526196 ECH