Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0048 ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTCGACCTTGATGAGGAAAACTATATGGAGGAGATGGATGATGATGTCGAAGAACAAGTAGATGATGATGGAGTGGATGGAGATGGAGCTGAAGATGAAAATGCTGAAGGTAGTGTTGAAGAACATGAATATGAAGAGTTGGCAGCGGAGGCTGATGGGAAAGACCAATTGGCTGAAGCAGAAAAGGGTGACATTGACACTGAATTTGTGGAGGAAGATGGGGAAAAGCCACCTCTCATTGATGAAGATGAGAAACAAAAGCATGATGAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGCATGTGAAGATGATTTAAGGGAATTGTGCGAACCAATGGGTGATATTCTTGAGGTGCGATTGATGAAAGATAGGGACACTGGGGACAACAAGGGTTATGCTTTTGTGGCTTTCAAAACAAAAGAGGAGGCACAAAAGGCTATTGAAGACATACATAACAAAGAATTTAAGGGAAAAACTTTGAGGTGTTCACTGTCTGAAACCAAACACAGATTGTTCATCGGTAATGTTCCAAAAACAGTGACAGAGGATGAGTTTAGGAAAGCCGTCGATGGTGTTGGTCCAGGAGTTGAAAGCATCGAGCTCATAAAGGACCCTCAAAATCCAAGCAAGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTTCGAGTTTTAAGCTATATGGAAATACACCAACTGTCACATGGGCAGATCCAAAGAATTCACCTGACCATTCTGCTTCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCAGAGAATGTCACTACTGATCAACTGAAGGAACTATTCCGTCGTCATGGGGAAGTAACAAAAGTGGTCATGCCACCAGGCAAAATTGGTGGGAAACGGGATTTTGGTTTCATTCATTTTGCTGAGAGGTCAAGTGCATTGAAAGCAGTAAAAGAAACAGAGAAATATGAAATTGATGGCCAAGTGCTTGAAGTTGTTCTTGCTAAGCCTCAAGCTGAAAAGAGACCTGATGCTTATGCCTTCAATCCTGGAGTTCACCCAAACCATCTTCCACATGCTGGTTACGGTAGCTATTCTGGAAATCCTTATGGCTCTTTAGGGACTGGCTACGGGGCTGCTCCTGCTTATCAACAGCCAATGATATATGGCAGAGGTCCAATGCCAGCAGGAATGCAGATGGTTCCCATGGTATTGCCAGATGGTCGAATCGGCTATGTCCTTCAACAGCCTGGTGTACAGGTTCCTGCTGCCCGACCTCGCAGAAATGAACGTAGCAATGGTCCAAGTGGTCAAGCTGGGCGAGGTGGCGGCGGCGGTAACGATGAAGGCAATCGTAGCAGAAGGTTTCGACCTTATTAG 1452 0.4421 MSEGAEIDERVDLDEENYMEEMDDDVEEQVDDDGVDGDGAEDENAEGSVEEHEYEELAAEADGKDQLAEAEKGDIDTEFVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNPGVHPNHLPHAGYGSYSGNPYGSLGTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAARPRRNERSNGPSGQAGRGGGGGNDEGNRSRRFRPY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0048 483 CDD RRM3_hnRNPR_like 283 361 - -
Lja1g0048 483 MobiDBLite consensus disorder prediction 51 74 - -
Lja1g0048 483 PANTHER GEO13361P1-RELATED 2 481 - -
Lja1g0048 483 SUPERFAMILY RNA-binding domain, RBD 276 388 IPR035979 GO:0003676
Lja1g0048 483 SUPERFAMILY RNA-binding domain, RBD 106 274 IPR035979 GO:0003676
Lja1g0048 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 361 IPR000504 GO:0003723
Lja1g0048 483 MobiDBLite consensus disorder prediction 8 50 - -
Lja1g0048 483 Gene3D - 272 402 IPR012677 -
Lja1g0048 483 SMART rrm2_1 110 183 IPR003954 GO:0003676
Lja1g0048 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 354 IPR000504 GO:0003723
Lja1g0048 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 257 IPR000504 GO:0003723
Lja1g0048 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Lja1g0048 483 MobiDBLite consensus disorder prediction 1 91 - -
Lja1g0048 483 MobiDBLite consensus disorder prediction 441 483 - -
Lja1g0048 483 SMART rrm1_1 285 357 IPR000504 GO:0003723
Lja1g0048 483 SMART rrm1_1 190 267 IPR000504 GO:0003723
Lja1g0048 483 SMART rrm1_1 110 183 IPR000504 GO:0003723
Lja1g0048 483 CDD RRM_SF 111 183 - -
Lja1g0048 483 Gene3D - 6 189 IPR012677 -
Lja1g0048 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Lja1g0048 483 Gene3D - 190 270 IPR012677 -
Lja1g0048 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 271 IPR000504 GO:0003723
Lja1g0048 483 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0048 Lja-Chr1 466631 471737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0048 111 459 Eukaryotic Initiation Factors Gene Family AT2G23350 25.714 4.72e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0048 K13161 - gmx:100790907 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0048 1 466631 471737 Lja1g0048 1 466631 471737 ECH