Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0043 ATGTCGCTCGGAGAGACTGCTTGCTCCTACGCCCTTCTCATCCTTGAGGATGATAAAATCGCTGCTACTGCTGATAACATCTCTACCTTGTTGAAGACGGCAAATGTTAAGGTAGAATCGTATTGGGCACCCTTATTTGCTAAACTTGCTGAGAAGAAGAATCTTCAGGATTTGATTGCCAGTGCTGCTGGCGGTGGTGGTTCAGTTGCTGTTGCAGCTGCCCCAGTTGCTGCTGCATCTGGTGGCGCTTCTGCTGCTGCTCCAGTTGAGGAGAAAAAGGAAGAACCCAAGGAAGAGAGTGACGATGATATGGGATTCAGCCTGTTTGATTAG 333 0.4865 MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLIASAAGGGGSVAVAAAPVAAASGGASAAAPVEEKKEEPKEESDDDMGFSLFD* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0043 110 MobiDBLite consensus disorder prediction 88 104 - -
Lja1g0043 110 Pfam 60s Acidic ribosomal protein 23 109 - -
Lja1g0043 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 102 - -
Lja1g0043 110 Hamap 50S ribosomal protein L12 [rpl12]. 6 110 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lja1g0043 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 102 - -
Lja1g0043 110 Gene3D - 1 62 IPR038716 -
Lja1g0043 110 CDD Ribosomal_P1 5 109 - -
Lja1g0043 110 MobiDBLite consensus disorder prediction 80 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0043 Lja-Chr1 434106 434869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0043 1 110 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 57.018 5.61e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0043 K02942 - gmx:100791962 119.012