Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0042 ATGGCAGCTAACGCCACCCTGTCTCTCTCCTTCACCTCCTTACTGAATCACAACCTCCAATTCCGACTTCCCTCTAAACGCTTCGTTTCATCTTCTTCGGTGCCTTTTCCTTCCCTGCGTCTTGTTGCGGGGAAGGGTAGGGTTTGCAGTTGCACTGCTTTGGCGGCAGTGGTGGATGAAGAAACGGCGGTTGCAGACGTCGGAGAGCAAGTAAACGATGAGGAAGGAAGACCGACCGAAGTTTATGTCTGCAACCTTCCTAGAAGCTGTGACACGGAACAGCTACTTCCCATGTTCAGGCCTCACGGAACCATTATATCTGCCGAGGTTTGCCGGCATGCCCAGAGCGGTGAAAGTAAAGGGTGTGCTTATGTCACAATGTCATCTATTGTCTCTGCAAAAAATGCAGTTTCTGCATTGGATGGATTGGATGTTGGTGGGCGAGAAATGCGGGTTAGATTTTCTGTTGAGGTGAATCCTAGGGGGAGGAATCTTGAGACGATGAACTCGTCACCCAGAAGAACTATATACTATGAAGCTCCTCATAAGCTGTATGTTGGGAATCTTGCCATGTCTGCTACACCTGAAGACGTGAGATATCTTTTTGCTAGATTTGGTAATGTGGCCAGTGTGAGGCTCTTGCAAGATTTGAAACAAGGCAGAAGACGAGCCTATGCTTTTATCTCTTATCTTTCTGAGAGAGAGCGTGATGCAGCAATGTCCCTCAATGGAACTGAATTTTGTGGTCGTAAAATTGTGGTTAGACAAGGTGTAGACAGAGAAAGCTGA 789 0.4753 MAANATLSLSFTSLLNHNLQFRLPSKRFVSSSSVPFPSLRLVAGKGRVCSCTALAAVVDEETAVADVGEQVNDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVVRQGVDRES* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0042 262 PANTHER OS02G0815200 PROTEIN 55 261 - -
Lja1g0042 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 252 IPR000504 GO:0003723
Lja1g0042 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 151 IPR000504 GO:0003723
Lja1g0042 262 Gene3D - 169 262 IPR012677 -
Lja1g0042 262 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 55 261 - -
Lja1g0042 262 CDD RRM_SF 184 255 - -
Lja1g0042 262 SUPERFAMILY RNA-binding domain, RBD 179 260 IPR035979 GO:0003676
Lja1g0042 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Lja1g0042 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Lja1g0042 262 Gene3D - 57 165 IPR012677 -
Lja1g0042 262 SUPERFAMILY RNA-binding domain, RBD 76 175 IPR035979 GO:0003676
Lja1g0042 262 CDD RRM_SF 81 153 - -
Lja1g0042 262 SMART rrm1_1 80 153 IPR000504 GO:0003723
Lja1g0042 262 SMART rrm1_1 183 255 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0042 Lja-Chr1 426045 427389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0042 79 261 Eukaryotic Initiation Factors Gene Family AT1G71770 23.913 4.61e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0042 - - adu:107486682 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0042 1 426045 427389 Lja1g0042 1 426045 427389 ECH