Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0040 ATGCAGACGCCGAATGATAATGGCGATGTGGAGAGGATTTTGCCTCAGACGGCCCTCAGAATATTGCTTGTCGAAGCTGATGATTCCACGCGCCAGATCATCGCCGCCCTTCTCCGTAAATGCAGTTACAAAGTAGTTGCTGCAGTTCGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGCACATGACATAGATCTCATATTAACTGAAGTCGATTTGCCTTCAATATCTGGATTTTCACTTCTTACTCTAATCACTGACCATGACTTCTGCAAACACATTCCTGTCATAATGATGTCATCTAATGACTCAGTTAGCATGGTCTTCAAATGCATGTTAAAAGGTGCAGCTGATTTTCTTATCAAACCTGTAAGGAGGAATGAGCTCAGGAACTTGTGGCAGCATGTCTGGAGAAGGCAGACTATAACCAAGCCTCCTCAAAAATTAACACTTGCACACAATAATAAACTTGATGCTGCGATAGAAAACAAGCCTGCAAGCAATGACTCCACCGGTTCTGTGGCTTCCACTCAGAAAAATAACGAAACTAGTGAGGCTCAAAGCACTTGTACTTCGCCAATTTTGGGAGCTGAGAGTGGTTCCATGGAAAATATGCAGGATGCAACCCAGCTGAAGAGTTCTTCAAATTTGAGTGATATTGATGCAGTGAAACAGGATAAATCTACCCAATTAGAAATGGAATCACCTAAGCATAACAGTGAAGCTGGAGAGAAATCAATTATATTTGTATCCGAAGCTGTCAAGAGCAACAAAACTTCGACTGGTTTAAGGCTAGGTCAAGGCTATGATTATATTGAAACCGAAAACAATGATGAAGTTATAAGGACAGAGTTAAGCAAAGGCAACCCTCACATTAGTACAGAGATTCGTGGATGCAGTGATGAACTCTTAGAACCTTCTTCTGGAGCTATGGACTTGATTGCTGCATTTGGGAATCTTCCAAAGAGAACTATTGGAAATCATAGTTTCCATGATGGTAGCACAGCCAAGTTTGAATTTGATACACAATTGGAACTTTCTACAAGAGGAGATTTTCCTGCATCGGAGGAAAGGCTAATGTTGAACCACACTAATGCTTCTGCATTTTCCCAGTATAGCAGTAGTAAGTTGTTTTCAGAGAACAGTCCTCATGAATCCCATGAATTATGTGAAAATACAAACATTTCTCATCGGTATGGGGGCAAAAATCAAAATCACAATCCGGAAAATACCAATTCTATGGTCATTGGCCAGTCTGGACAAGTGAAAACAAAATTCCCAAATAGTCAACTTGGATTCTTTCCTGCCACTGGGGTTAGTTTTGATAATGTGTCTACGGGAGATGGTGATGTTTTTCCTTCTATGCTCTACACACAATTGACTCCGAAATCAGTGTGCCAGAAGGAAAGTTCGCCATTTCCCACAAGTACTTCCTCCCAGTCCAATAATGAAAGTATGAAGTCGGAACATCATCACTGGTCAGATGATGCCACCTTTACTTCTGATAAATGTGAAAATGATCAAAGCAATTTGGATTGTGCTGTGAATGACTCTTCTGCTACCCGTCAAAGTTCTAGTACAAGCTTTTATCATGATTCTGCAAATCATAGTAGTAGTGGTGTAAATGGAAGCGGTGGCAGCGGAAGTGATGGAAATGTTACTTCAACTGGTGTAGATGATGAACTTAGAGGGACAGATTCTCATCGGACCAGCCAAAGAGAAGCAGCCCTTACAAAGTTCCGACTGAAGCGAAAGGACAGATGCTATGATAAAAAGGTACGATATGAAAGCAGGAAAAGACTGGCAGACAAGCGGCCTCGGGTGAAAGGACAGTTTGTTCGCCAAGTACAACACAACGAACATACAGCAGTAGAGGCCGGTGGTGGTTTCTGA 1899 0.4181 MQTPNDNGDVERILPQTALRILLVEADDSTRQIIAALLRKCSYKVVAAVRDGLKAWETLKNKAHDIDLILTEVDLPSISGFSLLTLITDHDFCKHIPVIMMSSNDSVSMVFKCMLKGAADFLIKPVRRNELRNLWQHVWRRQTITKPPQKLTLAHNNKLDAAIENKPASNDSTGSVASTQKNNETSEAQSTCTSPILGAESGSMENMQDATQLKSSSNLSDIDAVKQDKSTQLEMESPKHNSEAGEKSIIFVSEAVKSNKTSTGLRLGQGYDYIETENNDEVIRTELSKGNPHISTEIRGCSDELLEPSSGAMDLIAAFGNLPKRTIGNHSFHDGSTAKFEFDTQLELSTRGDFPASEERLMLNHTNASAFSQYSSSKLFSENSPHESHELCENTNISHRYGGKNQNHNPENTNSMVIGQSGQVKTKFPNSQLGFFPATGVSFDNVSTGDGDVFPSMLYTQLTPKSVCQKESSPFPTSTSSQSNNESMKSEHHHWSDDATFTSDKCENDQSNLDCAVNDSSATRQSSSTSFYHDSANHSSSGVNGSGGSGSDGNVTSTGVDDELRGTDSHRTSQREAALTKFRLKRKDRCYDKKVRYESRKRLADKRPRVKGQFVRQVQHNEHTAVEAGGGF* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0040 632 MobiDBLite consensus disorder prediction 525 577 - -
Lja1g0040 632 PANTHER TWO-COMPONENT RESPONSE REGULATOR 220 625 IPR045279 GO:0009736
Lja1g0040 632 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 214 IPR045279 GO:0009736
Lja1g0040 632 SUPERFAMILY CheY-like 19 151 IPR011006 -
Lja1g0040 632 MobiDBLite consensus disorder prediction 165 221 - -
Lja1g0040 632 ProSiteProfiles Response regulatory domain profile. 20 139 IPR001789 GO:0000160
Lja1g0040 632 Pfam Response regulator receiver domain 21 133 IPR001789 GO:0000160
Lja1g0040 632 MobiDBLite consensus disorder prediction 465 496 - -
Lja1g0040 632 MobiDBLite consensus disorder prediction 465 486 - -
Lja1g0040 632 MobiDBLite consensus disorder prediction 166 221 - -
Lja1g0040 632 PANTHER PRR RESPONSE REGULATOR 220 625 - -
Lja1g0040 632 PANTHER PRR RESPONSE REGULATOR 10 214 - -
Lja1g0040 632 ProSiteProfiles CCT domain profile. 575 617 IPR010402 GO:0005515
Lja1g0040 632 Gene3D - 18 269 - -
Lja1g0040 632 SMART REC_2 19 135 IPR001789 GO:0000160
Lja1g0040 632 CDD psREC_PRR 21 125 - -
Lja1g0040 632 MobiDBLite consensus disorder prediction 563 577 - -
Lja1g0040 632 MobiDBLite consensus disorder prediction 525 562 - -
Lja1g0040 632 Pfam CCT motif 575 617 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0040 Lja-Chr1 417081 420765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0040 574 619 Response Regulator Gene Family AT5G24470 86.957 2.20e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lja1g0040 Response_reg 2.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0040 K12130 - gmx:100779346 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0040 1 417081 420765 Lja1g0040 1 417081 420765 ECH
Lja3g1693 3 18768047 18771830 Lja1g0040 1 417081 420765 ECH