Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0038 ATGATGCATATGATCAAATTTAGGAAAAAGGAAGCACAAAGCTCTCACCGTGCGCATAACATCGAAATCAGTGGAGATCTTCCTGGTGCTAGAAGGAACATTTGTGGGGAAGCACCATGTGGGTTCTCGAATGCTGGATCCATCTCCAAGGAATCAGAAGAACGGTCAACTTCCATGCGGAAGCTTTTGATGGCAGTGGTCCTCTGTGTTATTTTCATGAGTGTTGAGGTAGTCGGTGGCATCAAGGCTAATAGCCTTGCGATTTTGACTGATGCAGCCCATTTGCTTTCAGATGTTGCAGCATTTTCCATCTCCTTGTTTTCATTATGGGCTGCAGGGTGGGATGCCAATCCTCGCCAATCATATGGATTTTTCAGAATAGAGATTTTGGGTGCTTTGGTTTCTATTCAGCTAATATGGTTGCTTGCTGGGATTCTGGTGTATGAAGCCATTGAAAGAATTCTTGCTGGGACTCATCATGTGGATGGCTTTTTAATGTTTGTGGTTGCTGCATTTGGTCTACTGGTTAACATCATTATGGCGCTGTTATTGGGTCATGATCATGGCCATGGACATAACGATCATGGCCACCACAACCATGAATTTCAAGTGTCTACTCATCATCATCATGTTCATGATCAACATCATAACGATCACACTCACCATCATGCTCCTGAGGAGGTTGCTAAACCACTTCTTGGTGGATCAAAAGAGAAGAAAAAGAGATGGAATATAAATGTACAAGGGGCTTATCTCCATGTTCTTGGTGACTCTATCCAAAGTGTTGGGGTGATGATTGGGGGAGCAATCATATGGTATAAACCTGAGTGGATTTTAGTTGATTTAATTTGCACATTAATCTTTTCTGTAATAGTGTTGGTGACAACTATTAATATGCTGAGAAACATATTGGAAGTTCTTATGGAGAGCACACCTAGAGAGATAGATGCAGCCAAGCTTGAAAGGGGGCTGCTAGACATGGAAGAAGTTGTGGCTGTTCATGAGTTGCATATATGGGCCATTACAGTTGGGAAGGTTTTACTGGCTTGTCATGTTAAAATCAGACCCGAAGTGGATCCAGAGATAGTGCTGGAAAAGGTTGTAGATTATATCAGAAGGGTTTATAACATAAGCCATGTGACTATACAGATAGAGCGCAACTAG 1164 0.4218 MMHMIKFRKKEAQSSHRAHNIEISGDLPGARRNICGEAPCGFSNAGSISKESEERSTSMRKLLMAVVLCVIFMSVEVVGGIKANSLAILTDAAHLLSDVAAFSISLFSLWAAGWDANPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIERILAGTHHVDGFLMFVVAAFGLLVNIIMALLLGHDHGHGHNDHGHHNHEFQVSTHHHHVHDQHHNDHTHHHAPEEVAKPLLGGSKEKKKRWNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWILVDLICTLIFSVIVLVTTINMLRNILEVLMESTPREIDAAKLERGLLDMEEVVAVHELHIWAITVGKVLLACHVKIRPEVDPEIVLEKVVDYIRRVYNISHVTIQIERN* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0038 387 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 11 386 - -
Lja1g0038 387 Pfam Cation efflux family 62 308 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Lja1g0038 387 PANTHER METAL TOLERANCE PROTEIN A1 11 386 - -
Lja1g0038 387 TIGRFAM CDF: cation diffusion facilitator family transporter 59 386 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Lja1g0038 387 Gene3D Cation efflux protein transmembrane domain 58 307 IPR027469 -
Lja1g0038 387 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 314 385 IPR036837 -
Lja1g0038 387 SUPERFAMILY Cation efflux protein transmembrane domain-like 56 309 IPR027469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0038 Lja-Chr1 407471 410514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0038 11 386 Inorganic Solute Cotransporters AT2G46800 67.588 8.83e-176 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0038 K14689 - gmx:100794876 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0038 1 407471 410514 Lja1g0038 1 407471 410514 ECH