Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0036 ATGGCCCCTCCTTCATTAGAAGAATCAAGTACAAAACTTTCCAACAATGAAGACAATCATCTTAAACAACAACAAGGAGAAGAAGGAGATGGACTCCTGTTTGGCATGCAAATTATAGGTTCATTTGTGGTTCCATTGGCTCTGCGATCAGCGATTGACCTTGGAGTTTTTGACATTCTTGCCAAAGCTGGTGAAGGTGCTAAGCTCTCTGCAAACGATATTGCACTTGAGATTGGCACCAACAACCCTGAAGCACCCGCAATGCTGGATCGTCTTCTCAGGATGCTGGCTAGTAACTCTCTGTTATCTTGCTCTGATCAACATTCACAGAGATTCTACAGCCTCTCCCATGGCTCCCAATATTTTGTCACCAATGCTGATGGTGTTTCTTTGGGACCCATCTTGGCCTTGATTATAGACAACGTCTTCTACCAAAGCTGGCCTGAACTGAAAGGAGCAATCCTGGAAGGAGGTGTACCATTCAACAGGGTTCATGGCATGCATGCTTTTGAATACCCAAATGTGGATCCAAGGTTCAATGATGTTTTCAACAAAGCTATGCTCAACTCAACCACTTTAACTATGAAGGGGATTCTTGAATTATACAATGGATTTGAGCACATCACTAAGCTGGTGGATGTTGGTGGTGGTCTTGGAATCAATCTTAAATTGGTCACCTCCAAATACCCTCATGTCCAAGGTGTTAACTTTGACTTGCCTCATGTCATACAACATGCACCTGTGTATGCAGGGGTGGAGCATGTGGAAGGAGATATGTTTGAAAGCGTTCCCACAGGGGATGCAATTTTCATGAAGTGGATACTTCATGATTGGAGTGATGAACACTGCCTGAAGCTGTTGAAGAATTGCTACAAAGCTATTCCTGATGATGGAAAGGTTATTGTTGTGGACTCAGTTGTGCCCGCTTTGCCTGAGACAACAACTGCAGCAAAGAATGTTTTCAATTCTGACGTCGTAATGATGACACAAAACCCAGGAGGAAAAGAACGAACCGAGCATGAATTCATGGAATTGGCTAAAGGATCTGGATTTAGTGGCATCAGATTCGTTTGCTCTGTCTCTGGCCTCTGGGTTATGGAGTTCTTTAAGTAG 1113 0.4367 MAPPSLEESSTKLSNNEDNHLKQQQGEEGDGLLFGMQIIGSFVVPLALRSAIDLGVFDILAKAGEGAKLSANDIALEIGTNNPEAPAMLDRLLRMLASNSLLSCSDQHSQRFYSLSHGSQYFVTNADGVSLGPILALIIDNVFYQSWPELKGAILEGGVPFNRVHGMHAFEYPNVDPRFNDVFNKAMLNSTTLTMKGILELYNGFEHITKLVDVGGGLGINLKLVTSKYPHVQGVNFDLPHVIQHAPVYAGVEHVEGDMFESVPTGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDDGKVIVVDSVVPALPETTTAAKNVFNSDVVMMTQNPGGKERTEHEFMELAKGSGFSGIRFVCSVSGLWVMEFFK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0036 370 PIRSF O-mtase 12 370 IPR016461 GO:0008168
Lja1g0036 370 SUPERFAMILY "Winged helix" DNA-binding domain 28 125 IPR036390 -
Lja1g0036 370 PANTHER O-METHYLTRANSFERASE 2 370 IPR016461 GO:0008168
Lja1g0036 370 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 2 370 - -
Lja1g0036 370 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Lja1g0036 370 Gene3D - 12 122 IPR036388 -
Lja1g0036 370 Pfam Dimerisation domain 47 97 IPR012967 GO:0046983
Lja1g0036 370 Gene3D Vaccinia Virus protein VP39 123 370 IPR029063 -
Lja1g0036 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 368 IPR029063 -
Lja1g0036 370 MobiDBLite consensus disorder prediction 1 23 - -
Lja1g0036 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 36 370 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0036 Lja-Chr1 401735 404728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0036 13 370 Monolignol Biosynthesis Gene Families AT5G54160 50.689 8.38e-139 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0036 K13066 - gmx:100789402 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0036 1 401735 404728 Lja1g0036 1 401735 404728 ECH