Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0035 ATGGATAACCTTCCTCTTGATTCCACATCAGAATTGGAAGATGATGAAAGCTTCTCGTATGCTATTCAGCTTGCCAACTCGGTTGTGCTTCCCATGGCACTGCAATCCGCAACTCAACTCGGAGTATTCGACGTTTTGCAAAAAGCGGGTCCAGATGCTAAGCTCTCCGCCGACCAGATCGCTTCCCAGCTTTCCTGTAACAACCCACAAGCGCCGCCAATGTTAGATCGCCTCCTCTCCCTTCTCGCTTCTCACTCTGTTATCAATTGCTCTGTTATTCAAGATCAACATAACCTTGGATCCTTTCAAAGACTCTACACCATCACTCCTGTCTCCAGATTCTTCGCTCGCGATTCTGATGCTGTTTCTTTAGGGCCTTTTCTCGACTTGTTTCATGATAAGGTCTTCCTTGCTAGCTGGTCCCAGCTGAAAGATGCAATTCAAGAAGGAGGTATTCCATTCAACAGGGTTCATGGGACACATGCCTTTGAGTATCCAAGCTTGGACTTGAGGTTCAATCAAGTTTTCAATACAGCAATGATCAATCACACTACTCTAGTTATGAAGAAGGTTGTTGAATGCTACAGAGGTTTTGAGGACATAAAAAGGCTTGTGGATGTAGGTGGTGGTCTTGGGATCAACATTAACTTGATCACTTCAAAATACCCTCATATTCAGGGTATTAATTTCGACTTGCCTCATGTCATAGAGAATGCCCCTTCCTATCCTGGAGTGGAACACATTGCTGGAGATATGTTTGAAAGGGTGCCTAAGGGAGATGCCATCTTTTTGAAGTGGATACTTCATGATTGGAGTGATGAACACTGCTTGAAGCTTTTGAAGAACTGCTATGCTGCTGTTCCTGATGATGGAAAGGTGATTGTTGTTGAGGCAGTTCTTTCCATTGTACCTGAGAATAATCCTACTTGGAAGTCTGTCTCCCAAATCGATGTAATGATGATGACTCAAAACCCAGGAGGGAAAGAGCGAACTGAGCAAGAATTCATGGAGCTAGCAACTGCGGCTGGATTTAGTGGCATTAGATATGAATGCTATGTTCGTTCCTTCTGGGTTATGGAATTCTTCAAGTAG 1092 0.4405 MDNLPLDSTSELEDDESFSYAIQLANSVVLPMALQSATQLGVFDVLQKAGPDAKLSADQIASQLSCNNPQAPPMLDRLLSLLASHSVINCSVIQDQHNLGSFQRLYTITPVSRFFARDSDAVSLGPFLDLFHDKVFLASWSQLKDAIQEGGIPFNRVHGTHAFEYPSLDLRFNQVFNTAMINHTTLVMKKVVECYRGFEDIKRLVDVGGGLGININLITSKYPHIQGINFDLPHVIENAPSYPGVEHIAGDMFERVPKGDAIFLKWILHDWSDEHCLKLLKNCYAAVPDDGKVIVVEAVLSIVPENNPTWKSVSQIDVMMMTQNPGGKERTEQEFMELATAAGFSGIRYECYVRSFWVMEFFK* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0035 363 PIRSF O-mtase 2 363 IPR016461 GO:0008168
Lja1g0035 363 Pfam Dimerisation domain 32 83 IPR012967 GO:0046983
Lja1g0035 363 Gene3D - 5 115 IPR036388 -
Lja1g0035 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 361 IPR029063 -
Lja1g0035 363 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171
Lja1g0035 363 PANTHER O-METHYLTRANSFERASE 14 363 IPR016461 GO:0008168
Lja1g0035 363 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 363 IPR016461 GO:0008168
Lja1g0035 363 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Lja1g0035 363 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 14 363 - -
Lja1g0035 363 SUPERFAMILY "Winged helix" DNA-binding domain 13 118 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0035 Lja-Chr1 381976 384433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0035 11 363 Monolignol Biosynthesis Gene Families AT5G54160 50.992 7.71e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0035 K13066 - gmx:100803633 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0035 1 381976 384433 Lja1g0035 1 381976 384433 ECH