Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0030 ATGGAGAGGGGTACGGGTACAGTTAGGGTTCCGAAGGGGGATGACACGGCGACGGCGACGGCGACGGCGGGGGCGGGGGGAGGTTCTTACTGGTTGGATGCCTGTGAGGACATCTCGTGTGATTTTATTGATTTTGATGCCGCGTCATCCATTGTTGTCTCAGTCTCAGACCACCCTGATAACGCTGCTTCCAATCAGGATTTCTTTGGTGGCATTGATCGAATCTTAGACAGCATTAAGAACGGTGCTGGCCTCCCTCTTGCTGCTCAACCCAATTCCACTTCTACTTCTACTACTACTACTACTGCAGATGCCTCTCCTTCCAAGGAAGATGATGCTCTTGTTGGTTTTCTCAATAATAATGGAGGATTGCCACATCCTCGCACTCATGCTTTTGACCATTCTGGATCTCAGAATAACCTGTCCAATGCTAATCAAGGGGAAGGGGGAGTGTTGGTTACTTGTTCTCAGGAAAATCATCTTCATCTTCATCTTCATGTTGATGCTATTGCTGACGAAACATGCAACAAAAGGCCTAGGCTTGCCAGCTACAACAATGACAGGCCTTATTATGCCAGACTCAACCACAGAGACAGGTGTTTCGATACCAGGAAGAGGCCAAGGGACAGGGATAATAAACATTGTGGTACTGGTAGGAGAGATGTTAATGTTAGAGACCAGAGGGGTTACTGGGAGAGGGATAAGTCAGGTTCCAATGACTTGGTTTTTCGCTTGGGCACTTGGGAAGCTGACCGTCATCCACAAGACAAGATACCAAATGAGGTTAAACGGGAAACCAATGCCAACCTTCATATCAAATCTCAGGAGGCTAAGGACAGGCTCCCTGAGGAAAAAGCCAGGCAGTATCAGTTGGATGTTCTTCAGCAGGCAAAGGAGAATAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATTAAAAGCATGCAAGATACTTTACAAAACCAGAATAAGAAATTGCTTGCAGTATTTCTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGAACTGGTTATCAAGTGGGACACTATTGCGGAGAAATGGGGCAAGATTTCTGGGATGCTCGCAGGTGGCAGCGTGAATTTGACACCAAACACGTTCTAGTCATGACCGCTCAAATTCTTTTAAACATTTTGAGGCATAGCATAATAAAAATGGAAGAAATCAATCTCCTGATTCTGGATGAGTGCCATCATGCTGTGAAGAAACATCCATATTCACTGGTTATGTCCGAGTTCTACCATACAACACCCAAAGATAAGAGACCAACTGTGTTTGGAATGACAGCTTCTCCTGTTAACTTGAAAGGTGTCTCCAGCCAAGTAGACTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGTAAAGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTGGAATATGATAAAGCTGCCAGTTTATGTTATCTGCATGAGCAGATAAAGCAGATGGAATTTGAAGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCAAGAGATGCTGGAGCTAAGGAAGAGCTTCGCCAAGTATACGGTGTTTCAGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTTGGTGAACTGGGACAATGGTCTGCATATAAGGTTGCACAATCATTTCTAGCAGCTTTGCAAAATGATGAAAGGGCAAACTTCCAACTTGATGTCAAATTTCAGGAATCTTATCTGAGTAAAGTTATCTCTCTTCTGAAATGTCAACTGTCAGAGGGTGCAGTTTCTGAAAAAAATGCCGCTGAGGTTAACCCGGATTCTGGTGCAGCTCACAGTGGTTCAGAACATGAAGAGATTGAAGAAGGAGAGCTTCCAGACGGCCATGTGGTCTCTGGCGGGGAGCATGTTGATGTCATAATAGGAGCTGCTGTGGCTGATGGCAAAGTTACCCCTAAAGTGCAGGCACTAATTAAAATACTTCTCAAGTATCAGAACACAGAAGACTTCCGTGCTATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTACCCAAGGTTTTTGCAGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCATAACAATAGTCAGGAAATGCGAACCTACCAAATGCAAGATACAATTGCTAAGTTTCGAGATGGGCGGGTCACATTGTTAGTTGCCACCAGTGTTGCTGAAGAAGGACTTGATATCCGACAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAGACTGTTCTAGCATACATTCAATCTAGGGGCCGTGCTAGAAAGCCTGGTTCTGATTACATCCTGATGGTTGAGAGGGGGAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAAACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTCAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGAAACCCAGCCTGGAACAGTTTACCAGGTGAAGTCAACCGGTGCAGTCGTGAGCTTAAATTCTGCTGTAGGTCTTGTCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAGGCATGAAAAACCTGACGGTCCTACTGAATATTCTTGCAAGCTTCAACTGCCATGTAATGCACCATTTGAATATCTAGAGGGTCCTATCTGCAGTTCAATGCGCCTGGCACAACAGGCTGTTTGTTTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCCTTCACTGACATGCTATTACCTGATAAAGGAAGCGGGGGAGAAAAAGAAAAGGCTGAGCAAAATGATGAAGGAGATCCCCTTCCGGGGACTGCTAGACACAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAGGATGCTTGCAAGAGCTCCAAATCGCTTCATCTTTTTATGTACGTTGTGAAGTGTGAAAATATAGGCCAGTCAAAGGATCCATTCTTGACTCAAGTTTCAGATTTTGCAGTTCTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCACGAACCGTGACTACAAAGGCATCTCTTGTCTTTGGAGGGTCGATAAGTATCACTGAGAGTCAGTTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCGTCTACCACTCCTTGGGATCCTGCAAAAGCATATTTATTTGTCCCAATGGTTGGCGATAAGTCTTTAGATCCTACGAACCAAATTGACTGGCATCTGGTTGAGACAATAACTGGAGCTTGTGCATGGAAAAATCCCCTCCAGAGAGCTCGGCCAGATGTTTATCTTGGCACTAATGAGAGAACATTAGGTGGAGATAAAAGGGAATATGGATTTGTGAAATTGCGGCATGGCATGGCTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTGGTGAAAGCTTCTGGGTTGGTTCCTAACAGAGATACCATGGAGACACAAAAACATAACAATATGAATACCAAAGGAAAATTGATGATGGCGGATGCCTGTGCTAATGCAGAGGATCTGGTAGGGAGAATTGTAACTGCTGCACATTCCGGGAAGAGGTTTTATGTTGATTCAATACGGTATGATATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGGTATCTTGGTCCTCTGGAGTACAATTCATATGCTGATTATTACAAGCAAAAGTATGGAGTTGATTTAATTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTACTGTCGCCTCGATTTGAACACAGTGAAGAACATGAAGGTGAATCTGAAGAGGATCATGACAAGACTTATTATGTTTTCCTTCCTCCTGAGTTATGCCTAGTACACCCTCTGCCTGGATCACTTGTTCGTGGTGCTCAGAGGTTGCCTTCAATAATGAGGAGGGTGGAAAGCTTGCTACTTGCAGTTGAGCTTAAGAATATGATAAATTATCCCGTCCAGGCTTTAAAGATCTTGGAAGCCTTGACTGCTGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCTGAGCTTCTAGGAGATGCTTACTTGAAATGGGTTGTTAGTCGATTTCTCTTCCTAAAGTACCCCCAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGGTGTTATATCAGTTTGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCTAGATGGGCGGCTCCTGGGGTGCTGCCTGTCTTTGATGAGGATACGAAGGATGGAGAGTCATCTATATTTGACCAGGACCAGTCCATTTCTAAGACGGGGATGATGGACAACTCTGATAGATTTGACAATGAAATGGAAGATGGTGAGATTGAGAGTGATTCAAGTTCTTATAGAGTTCTGTCCAGCAAGACACTTGCAGATGTAGTGGAAGCTCTGATTGGGGTATATTATGTCCAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTCAGGTTGAGTCTGATCCTGATGAGATGGAATGTACAAGAAAGCCATTCAGTGTTCCAGACAGCATAATTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTAAATTTGAAGTTTAATGACAAGGGGTTGCTGATAGAAGCCATAACTCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGTTAGAGTTCGTTGGTGATGCTGTCTTGGACCATCTTATAACCAGGCACTTGTTTTTCAGTTACACAGATCTGCCACCGGGACGACTGACTGACCTTCGGGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTGCAGTTAAACACAATCTTCACCTGCATCTCCGTCACGGATCCAGCGCCCTAGAAAAACAGATTAAAGAATTTGTTAAGGAAGCTCAAAATGAATTGTCACAGCCAGGGTTTAACTCCTTCGGTCTGGGGGACTGCAAAGCTCCAAAGGTCCTTGGTGACATTGTTGAATCTATTGCTGGTGCCATTTTTCTTGACAGTGGGAGGAATACTGCTGCTGTATGGAAGGTTTTTCAGCCTCTTTTACATCCTATGGTTACCCCAGAGACTTTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCAGAAGGTCTAGAGTACAGAGCAAGTCGAATTGGCAATTTGGCTACTGTTGAAGTATTCATTGATGGGGTACAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAAGTGGTAAAAACTCCGGAGAAGAATGATGAAAACATGAAGAAGAGTGGAAACCAGACATATACCAGACAGACATTAAATGATATCTGTCTGCGAAGAAATTGGCCTATGCCATTGTACAGGTGTGTGAGTGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCGGTGCGCGTGAATACTACTGATAGAGGATGGACAGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAGCTACTAAACAAATTATATTCATCGTAG 5838 0.4385 MERGTGTVRVPKGDDTATATATAGAGGGSYWLDACEDISCDFIDFDAASSIVVSVSDHPDNAASNQDFFGGIDRILDSIKNGAGLPLAAQPNSTSTSTTTTTADASPSKEDDALVGFLNNNGGLPHPRTHAFDHSGSQNNLSNANQGEGGVLVTCSQENHLHLHLHVDAIADETCNKRPRLASYNNDRPYYARLNHRDRCFDTRKRPRDRDNKHCGTGRRDVNVRDQRGYWERDKSGSNDLVFRLGTWEADRHPQDKIPNEVKRETNANLHIKSQEAKDRLPEEKARQYQLDVLQQAKENNTIAFLETGAGKTLIAVLLIKSMQDTLQNQNKKLLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEEINLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPTVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEFEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWSAYKVAQSFLAALQNDERANFQLDVKFQESYLSKVISLLKCQLSEGAVSEKNAAEVNPDSGAAHSGSEHEEIEEGELPDGHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVETQPGTVYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMERHEKPDGPTEYSCKLQLPCNAPFEYLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKAEQNDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACKSSKSLHLFMYVVKCENIGQSKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFGGSISITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSLDPTNQIDWHLVETITGACAWKNPLQRARPDVYLGTNERTLGGDKREYGFVKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDTMETQKHNNMNTKGKLMMADACANAEDLVGRIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYNSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEEHEGESEEDHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESLLLAVELKNMINYPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSIFDQDQSISKTGMMDNSDRFDNEMEDGEIESDSSSYRVLSSKTLADVVEALIGVYYVQGGKNAANHLMKWIGIQVESDPDEMECTRKPFSVPDSIIRSVDFDALEGALNLKFNDKGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHLHLRHGSSALEKQIKEFVKEAQNELSQPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRNTAAVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVVKTPEKNDENMKKSGNQTYTRQTLNDICLRRNWPMPLYRCVSEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYSS* 1946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0030 1945 Gene3D Ribonuclease III domain 1387 1579 IPR036389 GO:0004525|GO:0006396
Lja1g0030 1945 Gene3D Ribonuclease III domain 1603 1776 IPR036389 GO:0004525|GO:0006396
Lja1g0030 1945 Gene3D - 679 845 IPR027417 -
Lja1g0030 1945 SUPERFAMILY dsRNA-binding domain-like 1870 1940 - -
Lja1g0030 1945 MobiDBLite consensus disorder prediction 87 107 - -
Lja1g0030 1945 Gene3D - 1872 1942 - -
Lja1g0030 1945 SUPERFAMILY PAZ domain 1232 1364 IPR036085 GO:0005515
Lja1g0030 1945 SMART riboneu5 1622 1778 IPR000999 GO:0004525|GO:0006396
Lja1g0030 1945 SMART riboneu5 1403 1586 IPR000999 GO:0004525|GO:0006396
Lja1g0030 1945 Pfam Dicer dimerisation domain 881 969 - -
Lja1g0030 1945 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1781 1844 IPR014720 -
Lja1g0030 1945 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1866 1941 IPR014720 -
Lja1g0030 1945 SMART DRBM_3 1867 1940 IPR014720 -
Lja1g0030 1945 SMART DRBM_3 1782 1843 IPR014720 -
Lja1g0030 1945 Gene3D - 280 524 IPR027417 -
Lja1g0030 1945 Pfam Helicase conserved C-terminal domain 689 806 IPR001650 -
Lja1g0030 1945 ProSiteProfiles PAZ domain profile. 1224 1364 IPR003100 GO:0005515
Lja1g0030 1945 ProSitePatterns Ribonuclease III family signature. 1642 1650 IPR000999 GO:0004525|GO:0006396
Lja1g0030 1945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 820 IPR027417 -
Lja1g0030 1945 MobiDBLite consensus disorder prediction 970 993 - -
Lja1g0030 1945 CDD DEXHc_dicer 285 484 - -
Lja1g0030 1945 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g0030 1945 MobiDBLite consensus disorder prediction 648 663 - -
Lja1g0030 1945 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1867 1939 - -
Lja1g0030 1945 SUPERFAMILY dsRNA-binding domain-like 1737 1863 - -
Lja1g0030 1945 CDD DSRM_DCL_plant 1872 1933 - -
Lja1g0030 1945 SMART helicmild6 722 808 IPR001650 -
Lja1g0030 1945 PANTHER DICER-RELATED 250 1942 - -
Lja1g0030 1945 ProSiteProfiles Ribonuclease III family domain profile. 1607 1755 IPR000999 GO:0004525|GO:0006396
Lja1g0030 1945 CDD RIBOc 1623 1778 IPR000999 GO:0004525|GO:0006396
Lja1g0030 1945 CDD RIBOc 1405 1584 IPR000999 GO:0004525|GO:0006396
Lja1g0030 1945 Pfam Ribonuclease III domain 1421 1566 IPR000999 GO:0004525|GO:0006396
Lja1g0030 1945 Pfam Ribonuclease III domain 1642 1755 IPR000999 GO:0004525|GO:0006396
Lja1g0030 1945 Pfam Type III restriction enzyme, res subunit 293 452 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lja1g0030 1945 SUPERFAMILY RNase III domain-like 1380 1583 IPR036389 GO:0004525|GO:0006396
Lja1g0030 1945 CDD SF2_C_dicer 686 816 - -
Lja1g0030 1945 Gene3D Dicer dimerisation domain 876 978 IPR038248 -
Lja1g0030 1945 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 250 1942 - -
Lja1g0030 1945 Gene3D - 1779 1855 - -
Lja1g0030 1945 Gene3D paz domain 1242 1362 - -
Lja1g0030 1945 MobiDBLite consensus disorder prediction 86 111 - -
Lja1g0030 1945 ProSiteProfiles Ribonuclease III family domain profile. 1407 1566 IPR000999 GO:0004525|GO:0006396
Lja1g0030 1945 SMART PAZ_2_a_3 1224 1388 IPR003100 GO:0005515
Lja1g0030 1945 Pfam PAZ domain 1233 1384 IPR003100 GO:0005515
Lja1g0030 1945 MobiDBLite consensus disorder prediction 634 663 - -
Lja1g0030 1945 SUPERFAMILY RNase III domain-like 1601 1774 IPR036389 GO:0004525|GO:0006396
Lja1g0030 1945 MobiDBLite consensus disorder prediction 967 993 - -
Lja1g0030 1945 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 692 853 IPR001650 -
Lja1g0030 1945 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 881 976 IPR005034 GO:0016891
Lja1g0030 1945 SMART ultradead3 282 485 IPR014001 -
Lja1g0030 1945 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 293 470 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0030 Lja-Chr1 332400 344409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0030 705 848 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.77e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0030 K11592 - gmx:100811631 3245.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0030 1 332400 344409 Lja1g0030 1 332400 344409 ECH