Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0029 ATGGAGTTGATGGAAGAGGTTAAAGGGCATTCTGATAGCAGGGAAGAAGGGGAGGAATTAGAGGAAACAGCAACACCAGAGATCATCACAATCACAGATGCCACTTACAATTCATCATCTGGATTAGGGTTACACCAGCAACAAGATGCTGCAGCAGCAGTTTCTAATTTCACCAATCGCAGGAATCAGCAACTAGACTTGATGGACTTGACACTTGGAAGCCACAACCACACGGAATTAGAGGAACATGGATCAGGATCAGGATCAAGAGAAAGAGATCAGGTGGTGGTGGAGAAGGAGCACATGTTTGACAAAGTGGTGACGCCAAGCGATGTGGGGAAGCTGAACAGGCTGGTGATCCCAAAGCAGCATGCGGAGAAGTACTTTCCTCTGGACTCCTCATCCAACGAGAAAGGCCTTCTCCTCAATTTCGAGGACCGCAACGGGAAGCTGTGGCGTTTCAGGTACTCTTACTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGATGGAGCCGTTTCGTCAAGGATAAGAAGCTTGATGCAGGTGACATTGTCTCCTTCCAACGAGGACTCGGTGATCTTTACAGACACAGGTTGTACATTGATTGGAGGAGAAGAACTCATCATCCTCATCATGATCCTAATTCAAATTCACTCATCACACCTTTCTTCCTTCCCAATCACTACTCTATCAGATGGGGCTCTTCTTCTTCTGCTGCTTCTGCTGCTGGCGCCAGATTCTACTCCCTACCTTCTCCTATACCTCCATCCTCTACAACTACCATGCCCTTGCCTCGCTTATACAATGATCATTTTCACCAACAAAATTACAACATGTATAATTTTCATCAGCAGTACCATCATGGCGAGCTGAATTCGCCAGGATCTGGGTCAGTCTATTATCTGAGCTCTCCTCCAGCAGTACCATCAATGAGGGATCAACAAGAGATCAGAGGGAGCATTAATGTCCCCATGATCATTGATTCTGTACCAGTTTCTCATCATCATCACCACCACCACCACCACCAGCATGGGGGCAACATGAGTGCTTCTTCTGCTGTTGCTGGTGGTGCTAATAGTACTGCTGGGAAACGCCTAAGGCTATTTGGTGTGAACATGGAATGTGCTTCTTCTTCTTCTTCGGCGGCAGATCAAGAACATGTCAGCAGTACAATGCCCCTTCTTCAGCGCCGTGAAGATCCACTTTCATTATCATCATCAGCAAGGTTTGGGGATCAGAGAGGGGGAATGTTTGATTTGGATCCCTCTTTGCAGTATCGCCAGTGA 1290 0.4721 MELMEEVKGHSDSREEGEELEETATPEIITITDATYNSSSGLGLHQQQDAAAAVSNFTNRRNQQLDLMDLTLGSHNHTELEEHGSGSGSRERDQVVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGLGDLYRHRLYIDWRRRTHHPHHDPNSNSLITPFFLPNHYSIRWGSSSSAASAAGARFYSLPSPIPPSSTTTMPLPRLYNDHFHQQNYNMYNFHQQYHHGELNSPGSGSVYYLSSPPAVPSMRDQQEIRGSINVPMIIDSVPVSHHHHHHHHHQHGGNMSASSAVAGGANSTAGKRLRLFGVNMECASSSSSAADQEHVSSTMPLLQRREDPLSLSSSARFGDQRGGMFDLDPSLQYRQ* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0029 429 MobiDBLite consensus disorder prediction 333 360 - -
Lja1g0029 429 Pfam B3 DNA binding domain 103 207 IPR003340 GO:0003677
Lja1g0029 429 ProSiteProfiles B3 DNA-binding domain profile. 103 208 IPR003340 GO:0003677
Lja1g0029 429 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 63 388 - -
Lja1g0029 429 SMART B3_2 103 208 IPR003340 GO:0003677
Lja1g0029 429 MobiDBLite consensus disorder prediction 380 429 - -
Lja1g0029 429 SUPERFAMILY DNA-binding pseudobarrel domain 100 191 IPR015300 -
Lja1g0029 429 Gene3D - 96 216 IPR015300 -
Lja1g0029 429 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 63 388 IPR044800 GO:0003700
Lja1g0029 429 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g0029 429 MobiDBLite consensus disorder prediction 1 17 - -
Lja1g0029 429 CDD B3_DNA 101 190 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0029 Lja-Chr1 298022 300367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0029 67 379 RAV Transcription Factor Family AT2G46870 48.598 3.53e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g0029 B3 6e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0029 - - lja:Lj3g3v2520080.1 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0029 1 298022 300367 Lja1g0029 1 298022 300367 ECH