Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0025 ATGACACAGGGAACAACTCTCAGTCGCAGCAGACATAGACCAACAAAATTCATCCAATCAACATCAACACGACCCTGTTCTTCTTTTTTCATGTACATGTTTTCCAAATTCATAACACTAGTTTGTTGGTTCCTCCTCCTCCTCATCCTTCATGTTCAAGCCTCCTCTTGTAACCAACTTGATAGAGACTCACTCTTGGCATTCTCCATGAACATATCCCCTCATCCTCCTCTCAATTGGTCTGCTTCTGTTGATTGCTGCCTCTGGGAAGGTGTTGTTTGTGATGATGACCGACTCAGAGTTATTCATCTATTGCTTCCATCCAGAGCTCTCATTGGATTCATCTCCCCATCTCTCACAAACCTCACTGCTCTCTCTCACCTTAATCTTTCAAATAATCGCTTATCTGGTCATCTCCCAACCCAGTTTTTCTCACTTTTAAACCACCTGCAGATTCTTGATTTGAGCTACAATCGTCTCTCTGGTCAATTGCCGCTCTTTGTTGCTAGTAACAGCAGTGCCATTGGGAGTTTGATATCTTTTAATGTTAGTAAAAACAGCTTCACAGGTCAAATTCCCACTTCTCTCCTTTGCAGTAAAGACAACAACAACAACTCATCGTCTCTCAGATTCTTGGATTTTTCCTACAACCATTTTGATGGCAGGATTCAGCCTGGACTAGGAGCATGTTCCCAGCTGGAGAAATTTCGAGCAGGTTTCAATTCACTGCATGGTCCTCTTCCCACTGATATTTTTCATACTGTTGCTCTCAAAGAAATATCATTGCCCCTCAATAAATTCACTGGAACCATTGCTGATGATATAGCTAACCTGACCAACCTCACAGTTTTGGAGCTCTACTCCAATAGTTTCACAGGCACCATTCCCCGGGATATTGGCAACCTCTCCAAATTGGAACGGCTAGTCCTTCGCGGCAACAATCTAACTGGTTCTCTGCCACCATCTCTGATGAACTGTGTCAATCTTGTCATGTTGGATTTAAGGATCAACTCCTTGGAGGGAAATCTCTCAGCTTTCAATTTCTCCAAACTCCTCAGACTCACTACACTTGACCTTGGCAACAACAGCTTTACCGGTATTTTGCCACCAACCCTCTATGCTTGCAAGTCACTTAAGGCAGTGAGGCTAGCATCTAATCAGCTTGAGGGGCAGATCTCACCAGACATACTTAAACTTCAGTCTCTGGCTTTCCTATCAGTTTCTACCAACAATCTACATAATGTCACTGGGGCTCTAAGGATTCTCATGGGGTTTAAGAACCTTAGTACCCTTATGCTCTCCCAGAATTTTTTAGGTGAAATGGTGCCAGATGATGCAAACATAATAGACCAGGATGGATTCCCAAAGATCCAAGTTCTAGCCTTGGGTGCTTGTAATTTCACAGGCCAAATACCAGGCTGGCTTATGAAGCTTAAGAAGCTTGAGGTCTTGGATCTGTCCTATAACCAAATTAGTGGTGCAATTCCTCCTTGGCTGGGCACACTTCCTCAGCTTTTCTACATAGACTTGTCTTTTAACCATCTTACAGGAAAATTTCCTACAGAGCTTACAAGGCTTCCAGCACTGACATCTGAGCTGGCATATGATAAAGCAGAAAGGACTTACCTGGAGTTACCCCTATTTGCTAATGCCAACAATGTTTCCCAGCTGCAATATTATCAGCTTTCGAACCTGCCTCCAGCATTATATGTGGGAAACAATAGCCTCAGTGGCAGTATCCCCATCGATATTGGGAAACTGAAAGTCCTTCATCACCTTGATCTCAGTTGTAACAAATTCTCTGGCAATATCCCAGTTCAAATTTCTAACTTGACTAACTTAGAGAAACTATACCTCTCAGGAAACCAACTATCTGGTAAAATTCCTGCTTCTCTCAACCATTTGCATTTTCTGTCTTTTTTCAGTGTAGCACACAATGATCTTTGTGGACAGATACCAAATGGCGTTCAATTTGATACTTTCCCACCCTCCAGCTTTGAAGGAAACCCTCAATTGTGTGGTTCAGTTATTCAGCGCCCTTGTCTTCCTAGAAAAGGTGGTGCTGCAGGTGGTCACAGTAAAAAAAGAAATATAACTATTGGATTTGTCATTGCAGCTTGTTTTGGTACTGTTTCATTCATTTCAGTGTTGATAGTATGGATAGTAGCCAAGAGGAGGATCAATCCTGGAGGAGACCTTGACATGATTGAACCAGAATCAATTTATGCCAACTCTAACAGTGGGGTCCATCAGGAGTTTGACAAGGAAGCTAGCTTAGTGGTATTGTTCCCTAATAAAACAAATGAAATCAAGGACCTTACCATGCTTGAAATATTAAATGCCACTGAAAATTTCAGTCAGGAAAACATTATAGGCTGTGGAGGCTTTGGTTTGGTTTATAAAGCAACGTTACCAGATGGAACTACTCTAGCCATCAAGAAACTTTCAGGAGATATGGGTCTAATGGAGAGGGAATTCAAAGCAGAGGTAGAGGCTTTGTCAACAGCACAACATGAAAATCTGGTTGTATTGGAAGGCTATTGTGTGCACGAGGGCTTTCGACTTCTCATATATAATTACATGGAAAATGGAAGTCTGGATTACTGGTTGCATGAAAAGGCTGATGGTCCATCTCAACTTGATTGGCCTACTCGACTGAAGATAGCACAAGGTACAAGTTGTGGATTGGCTTACCTGCATCAGATATGTGAACCACACATAGTGCATCGTGATATAAAGTCAAGCAATATACTCCTTGATGAAAAGTTTGAGGCACATGTAGCTGATTTTGGGTTGGCGCGATCGATTCTTCCTTATCATACTCATGTTTCAACTGAACTTGTTGGTACATTAGGTTACATTCCCCCAGAATACGGACAAGCATGGATAGCAACTCTCAGAGGAGATATCTATAGCTTGGGGGTTGTCATGCTTGAGCTGCTCACTGGGAGGAGGCCTGTGGATCTATCCCGGCCCAAAATGTCAGCGGAGTTGGTTGCCTGGGTTCAACAAATGAGGAGTGAAAGAAAACAAGATCAAGTCTTTGATCCTCGTTTGATAAGGAAAGGCTATGAAGAAGAGATGGTGCAGGTGCTTGATGTGGCCTGCATGTGTGTCAACCAGAATCCTTTCAAGAGACCAAGCATCAAAGAAGTTGTTGAATGGTTGAAGAACGTAGGATCATCCAACCAGGATAATGCATATGAATAA 3210 0.4252 MTQGTTLSRSRHRPTKFIQSTSTRPCSSFFMYMFSKFITLVCWFLLLLILHVQASSCNQLDRDSLLAFSMNISPHPPLNWSASVDCCLWEGVVCDDDRLRVIHLLLPSRALIGFISPSLTNLTALSHLNLSNNRLSGHLPTQFFSLLNHLQILDLSYNRLSGQLPLFVASNSSAIGSLISFNVSKNSFTGQIPTSLLCSKDNNNNSSSLRFLDFSYNHFDGRIQPGLGACSQLEKFRAGFNSLHGPLPTDIFHTVALKEISLPLNKFTGTIADDIANLTNLTVLELYSNSFTGTIPRDIGNLSKLERLVLRGNNLTGSLPPSLMNCVNLVMLDLRINSLEGNLSAFNFSKLLRLTTLDLGNNSFTGILPPTLYACKSLKAVRLASNQLEGQISPDILKLQSLAFLSVSTNNLHNVTGALRILMGFKNLSTLMLSQNFLGEMVPDDANIIDQDGFPKIQVLALGACNFTGQIPGWLMKLKKLEVLDLSYNQISGAIPPWLGTLPQLFYIDLSFNHLTGKFPTELTRLPALTSELAYDKAERTYLELPLFANANNVSQLQYYQLSNLPPALYVGNNSLSGSIPIDIGKLKVLHHLDLSCNKFSGNIPVQISNLTNLEKLYLSGNQLSGKIPASLNHLHFLSFFSVAHNDLCGQIPNGVQFDTFPPSSFEGNPQLCGSVIQRPCLPRKGGAAGGHSKKRNITIGFVIAACFGTVSFISVLIVWIVAKRRINPGGDLDMIEPESIYANSNSGVHQEFDKEASLVVLFPNKTNEIKDLTMLEILNATENFSQENIIGCGGFGLVYKATLPDGTTLAIKKLSGDMGLMEREFKAEVEALSTAQHENLVVLEGYCVHEGFRLLIYNYMENGSLDYWLHEKADGPSQLDWPTRLKIAQGTSCGLAYLHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLARSILPYHTHVSTELVGTLGYIPPEYGQAWIATLRGDIYSLGVVMLELLTGRRPVDLSRPKMSAELVAWVQQMRSERKQDQVFDPRLIRKGYEEEMVQVLDVACMCVNQNPFKRPSIKEVVEWLKNVGSSNQDNAYE* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0025 1069 PANTHER LEUCINE RICH REPEAT KINASE 2 38 1061 - -
Lja1g0025 1069 SUPERFAMILY RNI-like 127 525 - -
Lja1g0025 1069 SUPERFAMILY Protein kinase-like (PK-like) 769 1056 IPR011009 -
Lja1g0025 1069 SMART serkin_6 785 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0025 1069 PANTHER OS06G0692500 PROTEIN 38 1061 - -
Lja1g0025 1069 Gene3D Transferase(Phosphotransferase) domain 1 861 1069 - -
Lja1g0025 1069 Pfam Protein kinase domain 786 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0025 1069 SMART LRR_typ_2 611 635 IPR003591 -
Lja1g0025 1069 SMART LRR_typ_2 147 171 IPR003591 -
Lja1g0025 1069 SMART LRR_typ_2 122 146 IPR003591 -
Lja1g0025 1069 SMART LRR_typ_2 351 375 IPR003591 -
Lja1g0025 1069 SMART LRR_typ_2 399 421 IPR003591 -
Lja1g0025 1069 SMART LRR_typ_2 302 326 IPR003591 -
Lja1g0025 1069 SMART LRR_typ_2 478 502 IPR003591 -
Lja1g0025 1069 SMART LRR_typ_2 278 301 IPR003591 -
Lja1g0025 1069 ProSiteProfiles Leucine-rich repeat profile. 480 503 IPR001611 GO:0005515
Lja1g0025 1069 ProSiteProfiles Leucine-rich repeat profile. 613 636 IPR001611 GO:0005515
Lja1g0025 1069 ProSitePatterns Protein kinases ATP-binding region signature. 791 814 IPR017441 GO:0005524
Lja1g0025 1069 Pfam Leucine Rich repeat 148 162 IPR001611 GO:0005515
Lja1g0025 1069 Pfam Leucine rich repeat N-terminal domain 61 95 IPR013210 -
Lja1g0025 1069 Gene3D Ribonuclease Inhibitor 347 686 IPR032675 -
Lja1g0025 1069 Gene3D Phosphorylase Kinase; domain 1 745 860 - -
Lja1g0025 1069 Pfam Leucine rich repeat 257 315 IPR001611 GO:0005515
Lja1g0025 1069 Pfam Leucine rich repeat 590 648 IPR001611 GO:0005515
Lja1g0025 1069 Pfam Leucine rich repeat 455 515 IPR001611 GO:0005515
Lja1g0025 1069 Gene3D Ribonuclease Inhibitor 58 346 IPR032675 -
Lja1g0025 1069 SMART LRR_sd22_2 611 634 - -
Lja1g0025 1069 SMART LRR_sd22_2 478 493 - -
Lja1g0025 1069 SMART LRR_sd22_2 147 162 - -
Lja1g0025 1069 SMART LRR_sd22_2 278 304 - -
Lja1g0025 1069 SUPERFAMILY L domain-like 423 674 - -
Lja1g0025 1069 ProSiteProfiles Protein kinase domain profile. 785 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0025 1069 Pfam Leucine Rich Repeat 353 373 IPR001611 GO:0005515
Lja1g0025 1069 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672|GO:0006468
Lja1g0025 1069 PRINTS Leucine-rich repeat signature 478 491 - -
Lja1g0025 1069 PRINTS Leucine-rich repeat signature 150 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0025 Lja-Chr1 268792 272648 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0025 11 725 Miscellaneous Gene Families AT1G17250 47.676 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lja1g0025 Pkinase 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0025 - - gmx:100782574 1615.13