Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0022 ATGACGATGCTGAGCACCAACAACAACAACAATAACAACAAGGTTGGTCAGTTTGGGGACACCACATTGACCAAAGTGTTCGTGGGAGGGCTGGCCTGGGAGACTCCGAAAGAGATACTGAGAGAGCAGTTTGACAAGTTCGGTGAGATCCTTGAAGCCGTCATCATTTCTGATAAGCTCACTGGCAGATCCAAAGGCTATGGTTTTGTGACATTCAAGGAAGCAGAGGCGGCCAAGAAGGCTTGCGAGGAACCAACTCTGATTATCAATGGTCGCAGAGCCAACTGCAATCTCGCATCGCTCGGTGCACGCCGTCCAAGGTCATCACCCATCCCTTCCCCCTCCCAAACTCCTCCACCTCCACAGGCACAACTAGCAACCAGGCAGGTTCAGTGGTATTATCCCCCTGCAGTTGCACCGGCTGCTTCCCCATACCATCATCAGCCACTTCCTTTCTACGGGTACCCGCACACTTACATTGCAGCGCCAGGGGACATGAATTACAATTACAATTACAATCAGAAGTTGAGCTACGGAAATGGTGGGGGCTACTATGGGCATCAAGTGTACCCGGTGCCAATGTACTACCAGCACCACCACCACCCAGCTGTGTACCACCACCGAGCCACCGAGACAATGGGTCTACCTGCACACATGTTCCATTTCGCCACCATGGCTCCTGCTACAGCTCAAGTTGGCACGGGTACTGAATGCTTCGGTCTAAGTCTGAGTCTGAGTCTGAGAGAAGCTTAA 753 0.5219 MTMLSTNNNNNNNKVGQFGDTTLTKVFVGGLAWETPKEILREQFDKFGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEEPTLIINGRRANCNLASLGARRPRSSPIPSPSQTPPPPQAQLATRQVQWYYPPAVAPAASPYHHQPLPFYGYPHTYIAAPGDMNYNYNYNQKLSYGNGGGYYGHQVYPVPMYYQHHHHPAVYHHRATETMGLPAHMFHFATMAPATAQVGTGTECFGLSLSLSLREA* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0022 250 MobiDBLite consensus disorder prediction 102 124 - -
Lja1g0022 250 SMART rrm1_1 25 97 IPR000504 GO:0003723
Lja1g0022 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 92 IPR000504 GO:0003723
Lja1g0022 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Lja1g0022 250 Gene3D - 4 110 IPR012677 -
Lja1g0022 250 PANTHER GEO13361P1-RELATED 11 232 - -
Lja1g0022 250 SUPERFAMILY RNA-binding domain, RBD 23 111 IPR035979 GO:0003676
Lja1g0022 250 CDD RRM_RBM24_RBM38_like 24 99 - -
Lja1g0022 250 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 11 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0022 Lja-Chr1 249137 251029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0022 20 159 C2H2 Transcription Factor Family AT2G19380 31.373 4.28e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0022 - - lja:Lj1g3v5061260.2 310.842