Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0019 ATGGTGGAGCTCCGAAGGCTGCTGTTGATGCTGTTCATCATCACCACTACTTGCTTTCTTCATTGGATGCCCAATGGTGTCACTGCCACAGATCCAAATGATGTTGCTGCTGTAAAGGCTATTTTTCAAAGCATGAACTCACCATCCCAGCTAGGTTGGCCTGCTAATGGTGATGATCCATGTGGACAGTCTTGGAAAGGCATTACATGTTCAGGAAACCGTGTTACAGAGATTAAGTTATCTAATCTTGGACTAACTGGAACATTGGCTTACGGATTACAAGCATTGACATCTGTGACCAGCCTAGACATGAGTGGCAACAATCTTATAGGAAACATACCATACCAACTTCCTCCAAATGTTCAGCGCTTAAATCTTGCTTATAATAACATAACCGGAACAGTCCCTTACTCTATTTCTAACTTGACCTCTCTTACGCACTTGAATCTTAGTCACAATCAGCTCCTGCAAGGACTGAGTGTCGACTTTTACAATCTTTCCACTCTCTCCAAACTGGATCTCTCTTTTAATTCTCTGACTGGTGACCTCCCTCAGACTCTGAGCTCGCTTTCAGCAATAACCACCATGTATCTGCAAAACAACCAGTTTACAGGCACTATTAATGTCCTTGCTTATCTGCCTCTGGATAGTCTGAATGTGGAAAACAATCATTTTACAGGATGGATACCGGAAAATTTGAAAAACATAGACCTACGGACTGGTGGTAATGCTTGGAGCTCAGGACCTGCACCCCCACCTCCACCTGGGACACCTCCAGCACCTAAAAGCAATAGACACCACAAATCGGGTGGTGGAAGAACCATTGTCCAAGATGCTGGTAGTGGCACAGTTGATGAGGGCAAAAAGTCTGGAATAGGAGGTGGTGGCATAGCTGGAATCGTGGTCTCCATCGTTTTTGTTGGGGCAATAGTAGCATTCTTTCTAGTGAAGAGAAAATCCAAGAAGTCGTCTTCAGATTTAGAAAAGCTGGGCAGTCAGTCCTTGGCTTCTCTTCCTTCAAATGAAGTGCATGGGAATTCTCTGCAAACTTCCTCCGTGACTGGCATGAAGACATTTGATACTTCTGCTTCAATAACTCTTAAACCCCCACCCATTGATCGTAATAAATCGTTTGATGACAATGAATTCTCTAAGAAGCCCACTATTGTGAAGAAGACTATTACACCTCCAACAGATGTGCAATCATATTCTATAGCTGATCTGCAGATTGCTACTGGCAGCTTCAGTGTGGATCATCTCGTTGGTGAGGGGTCTTTTGGGCGTGTATATCGTGCTCAATTTGATGATGGGAAGGTTCTTGCAGTGAAGAAAATAGATGCGTCTGTCCTTCCCAATGAATTTTCAGACGATTTTACAGAAATAGTGTCAAACATCTCCAATTTACATCATCCAAATGTTACAGAGCTTGCAGGTTATTGCTCAGAGTATGGACAACACCTCTTAGTCTACGAGTTTCATAAAATTGGTTCGCTGCATGACTTCCTTCACCTCTCAGATGAAGATAGTAAACCATTGATATGGAATTCCCGTGTCAAGATAGCTTTGGGGACTGCACGTGCTTTAGAATACCTACATGAAGTTTGTTCGCCATCAGTTGTTCACAAGAATATCAAGTCAGCGAATATATTACTTGATACAGAGCTTAATCCTCATCTTTCAGACAGTGGCTTGGCAAGCTATATTCCAAATGCAGACCAGATATTGAACCAAAATGTTGGATCTGGATACGATGCACCAGAAGTTTCCTTGTCTGGTCAGTACACTCTGAAAAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAGCTTCTCAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGACCTGAGCAGTCTTTGGTTCGATGGGCAACTCCTCAACTCCATGACATTGATGCATTGGCTAAAATGGTTGACCCTGCACTGAAAGGGCTATATCCTGTTAAATCTCTTTCTCGTTTTGCTGATGTTATTGCTCTTTGCGTTCAGCTTGAGCCCGAATTCCGACCACCCATGTCAGAAGTGGTTCAGGCGCTGGTACGATTAGTGCAGCGAGCTAACATGAGCAGGCGAACAACATTTGGAAGTGATCATGGATCCCAACGAGGGAGTGATGATCCAGCTATACGTGACATTTGA 2163 0.4364 MVELRRLLLMLFIITTTCFLHWMPNGVTATDPNDVAAVKAIFQSMNSPSQLGWPANGDDPCGQSWKGITCSGNRVTEIKLSNLGLTGTLAYGLQALTSVTSLDMSGNNLIGNIPYQLPPNVQRLNLAYNNITGTVPYSISNLTSLTHLNLSHNQLLQGLSVDFYNLSTLSKLDLSFNSLTGDLPQTLSSLSAITTMYLQNNQFTGTINVLAYLPLDSLNVENNHFTGWIPENLKNIDLRTGGNAWSSGPAPPPPPGTPPAPKSNRHHKSGGGRTIVQDAGSGTVDEGKKSGIGGGGIAGIVVSIVFVGAIVAFFLVKRKSKKSSSDLEKLGSQSLASLPSNEVHGNSLQTSSVTGMKTFDTSASITLKPPPIDRNKSFDDNEFSKKPTIVKKTITPPTDVQSYSIADLQIATGSFSVDHLVGEGSFGRVYRAQFDDGKVLAVKKIDASVLPNEFSDDFTEIVSNISNLHHPNVTELAGYCSEYGQHLLVYEFHKIGSLHDFLHLSDEDSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKNIKSANILLDTELNPHLSDSGLASYIPNADQILNQNVGSGYDAPEVSLSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRPEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQLEPEFRPPMSEVVQALVRLVQRANMSRRTTFGSDHGSQRGSDDPAIRDI* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0019 720 MobiDBLite consensus disorder prediction 699 720 - -
Lja1g0019 720 MobiDBLite consensus disorder prediction 247 261 - -
Lja1g0019 720 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 27 716 - -
Lja1g0019 720 SUPERFAMILY Protein kinase-like (PK-like) 396 687 IPR011009 -
Lja1g0019 720 Pfam Leucine rich repeat 119 155 IPR001611 GO:0005515
Lja1g0019 720 SUPERFAMILY L domain-like 30 235 - -
Lja1g0019 720 MobiDBLite consensus disorder prediction 240 290 - -
Lja1g0019 720 Gene3D Phosphorylase Kinase; domain 1 377 492 - -
Lja1g0019 720 Pfam Protein tyrosine and serine/threonine kinase 418 687 IPR001245 GO:0004672|GO:0006468
Lja1g0019 720 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Lja1g0019 720 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524
Lja1g0019 720 Gene3D Ribonuclease Inhibitor 31 251 IPR032675 -
Lja1g0019 720 Pfam Leucine Rich repeat 97 112 IPR001611 GO:0005515
Lja1g0019 720 ProSiteProfiles Protein kinase domain profile. 415 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g0019 720 Gene3D Transferase(Phosphotransferase) domain 1 494 708 - -
Lja1g0019 720 PANTHER OS01G0253100 PROTEIN 27 716 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0019 Lja-Chr1 224026 232176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0019 8 714 Strubbelig Receptor Gene Family AT1G53730 63.445 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Lja1g0019 PK_Tyr_Ser-Thr 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0019 - - gmx:100807707 1135.17