Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0018 ATGGGTGGTAGTGATGATCACGAGGACGATTTCAAGGATGAGAAGAATCCTCGCCCCCTGGATGAGGATGACATCGCCCTCCTCAAAACCTACGGTTTGGGACCTTATTCAACAAGCATTAAAAATGTGGAGAAGGAAATAAAAGATATGGCAAAGAAAGTCAATGATGTATGTATGTATGTATGTATCAAGGAGTCTGATACCGGTTTGGCTGCACCCAGCCAGTGGGATCTTGTATCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGGTAGCAAGGTGCCCAAAGATTATAAATCCAAACTCTGAAGATGCCAAATATGTTATTAATGTCAAACAGATTGCCAAGTTTGTTGTTGGGCTGGGTGACAAAGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGGGTTGATAGGAACAAGTATCAGATTCAGATTCCATTGCCTCCAAAAATTGACCCAAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAGTTGTTGAACTTCCCATGCTCCACCCAGAGAAATTCGTTAAGTTAGGAATAGATCCTCCAAAGGGTGTTCTTTGCTATGGCCCACCAGGGACTGGCAAAACACTTTTGGCTAGGGCAGTGGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATAGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGCATGGTTCGTGAGCTGTTTCAGATGGCCCGCTCAAAAAAGGCATGCATTGTCTTTTTTGATGAAGTTGATGCTATTGGAGGTGCACGGTTTGATGATGGTGTTGGTGGTGATAATGAGGTTCAACGTACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTTTTGATGGCAACAAACAGGCCGGACACTCTAGATCCAGCACTACTGCGGCCTGGACGATTGGACCGTAAAGTAGAATTTGGCCTTCCTGATTTGGAGAGTAGGACTCAAATATTCAAGATTCACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGGAGCTGATATAAGGAGTGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGCCCTAAGGAAGACGGTAACAGAGAAAGATTTCCTAGATGCAGTTAATAAAGTCATAAAAGGATACCAGAAGTTCAGTGCAACTCCCAAATATATGGTTTACAACTGA 1296 0.4329 MGGSDDHEDDFKDEKNPRPLDEDDIALLKTYGLGPYSTSIKNVEKEIKDMAKKVNDVCMYVCIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCPKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRALRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0018 431 Gene3D - 344 425 - -
Lja1g0018 431 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 8 429 - -
Lja1g0018 431 CDD AAA 176 343 - -
Lja1g0018 431 SMART AAA_5 206 345 IPR003593 -
Lja1g0018 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 421 IPR027417 -
Lja1g0018 431 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 8 429 - -
Lja1g0018 431 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 104 414 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lja1g0018 431 Gene3D - 34 162 IPR012340 -
Lja1g0018 431 Pfam AAA+ lid domain 365 408 IPR041569 -
Lja1g0018 431 ProSitePatterns AAA-protein family signature. 313 331 IPR003960 GO:0005524|GO:0016887
Lja1g0018 431 Gene3D - 163 342 IPR027417 -
Lja1g0018 431 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g0018 431 Pfam ATPase family associated with various cellular activities (AAA) 210 342 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0018 Lja-Chr1 219935 223702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0018 175 396 Calmodulin-binding Proteins AT3G56690 37.220 1.60e-41 155