Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0012 ATGTGGTGGAGATCGGCATCGTTCATCCTGGACAGGCAGCAAAACGACGACGGTTTGAGGGAGGAGGAATCTCTTCCTCCGCCGGGTGCAACCTCAAAACCTAACCCTAACATTTCCGCTTACTATGAGACGAGAGCGGCACACCACGGTGTGGTCACCAGCGACTGGTTGGCCCAGGCTCAGGCTGCCATTCAAGAGCCTACTGAGTTGGAAGTCAATGATAAGATTAAGCAGCAGCATCCCTTCAGTGTGATCGATGAGTTTAATAACTGGCGAAAACAACCCCACTTGGCCGAGGCCGTCGCCGCCATTCGCGCCTTGGCCGCCGTCATAAGGTCTAGCGAGGCTACCACCATGATGGAGCTCGAAATTGACCTACACAAAGCCTCGGATTCTCTCAAATCCTGGGATACCACCTCTATCTCTTTGACCGCGGGCTGCGATCTGTTCATGCGATATGTAACAAGGACCGCTGCTTTAGAATATGAAGACTTCAACTCGGCTAAATCTCGCCTCATTGAACGTGCCGACAAGTTTGGGGAAATCTCCTATAAGGCTCGCAAAATTATTGCAATGTTGAGTCAAGATTTTATATTTGATGGTTGTACAATTTTAGTTCATGGTTTCTCCAGAGTTGTCTTTGAAGTTCTAAAGCTCGCAGCACAGAATAAGAAACTTTTCCGGGTCTTCTGCACAGAGGGAAGACCTGACAGAACAGGATTACGTCTGTCCAATGAGCTGGCCAAGCTTGATGTTCCTGTGAAACTTGTAATAGACTCTGCAGTTGCATATACTATGGATGAAGTGGACATGGTTTTTGTGGGTGCAGATGGAGTTGTCGAAAGTGGGGGCATAATTAACATGATGGGGACATACCAAATCGCATTGGTTGCACACAGTATGAATAAACCAGTGTATGTCGCTGCTGAAAGCTACAAGTTTGCTCGTCTTTACCCTCTTGACCAAAAGGATCTGTCACCTGCCTTACGCCCTATTGATTTCGGTGTACCCATTCCGTCCAAGGTTGAGGTTGAAAGGTCTGCGCGGGACTACACCCCTCCTCAATATCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCTGTTGTTAGTGATGAGTTAATCCAGCTATACTTATAG 1146 0.4756 MWWRSASFILDRQQNDDGLREEESLPPPGATSKPNPNISAYYETRAAHHGVVTSDWLAQAQAAIQEPTELEVNDKIKQQHPFSVIDEFNNWRKQPHLAEAVAAIRALAAVIRSSEATTMMELEIDLHKASDSLKSWDTTSISLTAGCDLFMRYVTRTAALEYEDFNSAKSRLIERADKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVFEVLKLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDLSPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0012 381 SUPERFAMILY NagB/RpiA/CoA transferase-like 96 380 IPR037171 -
Lja1g0012 381 Gene3D - 185 381 IPR042529 -
Lja1g0012 381 MobiDBLite consensus disorder prediction 13 38 - -
Lja1g0012 381 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 37 381 - -
Lja1g0012 381 Gene3D - 81 182 IPR042528 -
Lja1g0012 381 Pfam Initiation factor 2 subunit family 96 369 IPR000649 GO:0044237
Lja1g0012 381 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 37 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0012 Lja-Chr1 127907 130005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0012 1 381 Eukaryotic Initiation Factors Gene Family AT1G53880 80.412 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0012 K03239 - gmx:100799015 639.417