Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0010 ATGAAACAATTAGCCTTTAACAAAATTTCAGGTTCCTCGTCGTCTAACAAGAAGCTCTTCTGGCCTCTCTTTGCTACTTTGCTTCTTGTGGTCGCCGCCATTGTGGTTGTGGGCGTATCAGTAAGTTCCCGTGGCAAGAACGATAATATTGCCTACTTCTCTTCATCCCACGTGATCATCAAAAGCGCTTGCAGCAGCACTCTGTACCCAGATTTGTGCTTGTCAACACTATTAGCCTCCTCCAACTCTGACTCTCAGAAAGTAGTTTCCGGTCACAAAGATGTGATAGAGTTGTCCTTGAACATCACCACTGGAATTGTTCAGCGCAATTACTTCACGGTGGAGAGGCTGCTCTTAGAAAGAAAGGGCGCCGGCCACACGCTCACCAAGAGGCAGAAAACCGCTCTCCACGATTGCCTGGAAACCATTGATGAGACCCTCGACGAGCTGAGCAAGGCCAAGGATGATCTCATACATTCTGATCTCTCCGCCATAACTAACCAAGCTACTTGCTTAGATGGTTTCTCCCACGACGTAGCTGACAAGAACCTCAGGAAGTATCTGGAGGAAGGAGAATTGCATGCGGAGCGCATGTGCAGCAACGCACTGGCAATGACCAACAACCTCACTGATGAGATCAACAACAGCAGGAGGAAACTGATGTATATGTCCATAGATCAGCTGGAGGATAAGGAGGATGGGATGATGATCAGGTGGCCCGAATGGATTTCTATAAAAGCAGGAGTCTACAGAGAGAATGTGGATGTGCCGAAGAAGAAGACTAATATCATGTTCGTTGGTGATGGGAGGACCAACACTATCATCACGGCAAGTAGAAATGTTGTTGATGGCAGCACCACCTTCAACTCTGCCACCGTCGCCGTGGTGGGTGAAGGATTCTTGGCGCGAGACATTACCTTTCAAAACACAGCAGGTCCCTCAAAGCACCAAGCAGTGGCCCTTCGAGTGGGGGCAGATCTCTCAGCCTTCTACTTGTGCGACTTCCTTGCGTACCAAGACACCCTCTACGTTCACAGCAATCGGCAGTTCTTTGTGAAATGTTTAATAGCTGGCACTGTTGACTTCATCTTTGGGAACTCAGCTGTTGTGTTCCAAGACTGTGACATCCATGCCAGGCGTCCCAACTCAGGCCAGAAGAACATGGTCACTGCACAAGGACGCCTTGATCCTAACCAAAACACAGGCATTGTCATCCAAAAGTGTAGGATTGGTGCCACCAAGGATTTGGAAGCCGTTAAGAGCAGCTTCCCCACGTTCCTTGGGAGGCCATGGAAGGACTACTCTAGGACTGTTATCATGCAATCTTCCATAACTGATGTCATTGACCCTGCTGGCTGGCACGAGTGGAATGGCAATTTTGCTCTCAATACCTTGTTTTATGGGGAGTATCTCAACACTGGGCCAGGTGCTGCCACCTCCCGAAGGGTTAACTGGAAAGGGTTTAAGGTCATCACCAGTGCTTCCGAGGCCCAGGCTTTTACTCCAGCTAATTTCATTGCAGGTTCTACCTGGTTGTCCTCCACTGGATTCCCATTCTCTCTTGGTCTTTAA 1572 0.4892 MKQLAFNKISGSSSSNKKLFWPLFATLLLVVAAIVVVGVSVSSRGKNDNIAYFSSSHVIIKSACSSTLYPDLCLSTLLASSNSDSQKVVSGHKDVIELSLNITTGIVQRNYFTVERLLLERKGAGHTLTKRQKTALHDCLETIDETLDELSKAKDDLIHSDLSAITNQATCLDGFSHDVADKNLRKYLEEGELHAERMCSNALAMTNNLTDEINNSRRKLMYMSIDQLEDKEDGMMIRWPEWISIKAGVYRENVDVPKKKTNIMFVGDGRTNTIITASRNVVDGSTTFNSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYLCDFLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNSAVVFQDCDIHARRPNSGQKNMVTAQGRLDPNQNTGIVIQKCRIGATKDLEAVKSSFPTFLGRPWKDYSRTVIMQSSITDVIDPAGWHEWNGNFALNTLFYGEYLNTGPGAATSRRVNWKGFKVITSASEAQAFTPANFIAGSTWLSSTGFPFSLGL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0010 523 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Lja1g0010 523 PANTHER PECTINESTERASE 243 522 - -
Lja1g0010 523 PANTHER PECTINESTERASE 16 244 - -
Lja1g0010 523 PANTHER PECTINESTERASE 243 522 - -
Lja1g0010 523 PANTHER PECTINESTERASE 16 244 - -
Lja1g0010 523 Pfam Pectinesterase 242 508 IPR000070 GO:0030599|GO:0042545
Lja1g0010 523 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 210 IPR035513 -
Lja1g0010 523 SUPERFAMILY Pectin lyase-like 242 522 IPR011050 -
Lja1g0010 523 Pfam Plant invertase/pectin methylesterase inhibitor 60 205 IPR006501 GO:0004857
Lja1g0010 523 CDD PMEI-like_3 62 210 - -
Lja1g0010 523 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 211 IPR035513 -
Lja1g0010 523 Gene3D - 225 523 IPR012334 -
Lja1g0010 523 SMART PMEI_2 55 205 IPR006501 GO:0004857
Lja1g0010 523 TIGRFAM PME_inhib: pectinesterase inhibitor domain 47 210 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0010 Lja-Chr1 95342 103576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0010 16 523 Carbohydrate Esterase AT3G14310 58.191 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0010 K01051 - jre:109013060 660.218