Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0007 ATGAGCATGAGTGACTCGTCGTCGTCCGTTGCAAGTGATAAACTGGGTGAGTCCCCAGCCGTTGAGTTTACAGGGAAGATTATGATGGGGGCTATAATAGTTTTATTCATGGTTGTCGTGTGTTTTCTGTTCAAGCATCTCTATGACAAAGGCTTCTGGTGGCGCCCTGGAGGAGACATCACCACTGCTCCTCAATCCGAACCCCGCCGCCCTAGAACTGGCCTTGATCCTTCTGTCCTCAGGTCTCTACCTGTAGTGGTATTCCAATCCCAAGACTTCAAGGATGGTTTAGAATGTGCAGTTTGCCTCTCCGAGCTTGATGAAGGAGAAAAGGCCAGGCTTTTACCTAAATGCAATCATGGCTTTCACGTTGATTGCATTGATATGTGGTTCCAATCCCATTCTACTTGCCCTCTTTGCAGGACTTCAGTAGCCTCTCATGACTCTGACAACAACCTCCAATCATCATCATCAGATTCTTCCTCAACTTTCCCCACAAATGTGTTGATTTGGGGCAACGACACCCAAATAAGTAGTACTACTACACCAACTTCTTCTTTGGAAGGAAGCACTTCTCAGCCTCCTCAGGCTCAGCTACCTTGCTCCTCATCCTCCTCTTCCCATACAAGCTGTAACTGTAGTAATGGAAATGGAGAGTTAGTGATTGATATACCAAGTCAGATCACTTCATCCTCTTTATCACCTTCTGCAAGCACCTTTGCGGAAGATGAGCTGAAATCGCCCATTATAGGGAGGTTGAGATCGTTGAAGAGACTATTAAGCTGGGACACAAGGCTAAATCCTTTGACCCCGCGTTCTGCTTCTTCAGATGTCGAACAAGCAGGGGGAAGACAGAGCTAG 861 0.4692 MSMSDSSSSVASDKLGESPAVEFTGKIMMGAIIVLFMVVVCFLFKHLYDKGFWWRPGGDITTAPQSEPRRPRTGLDPSVLRSLPVVVFQSQDFKDGLECAVCLSELDEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRTSVASHDSDNNLQSSSSDSSSTFPTNVLIWGNDTQISSTTTPTSSLEGSTSQPPQAQLPCSSSSSSHTSCNCSNGNGELVIDIPSQITSSSLSPSASTFAEDELKSPIIGRLRSLKRLLSWDTRLNPLTPRSASSDVEQAGGRQS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0007 286 MobiDBLite consensus disorder prediction 179 203 - -
Lja1g0007 286 SUPERFAMILY RING/U-box 79 147 - -
Lja1g0007 286 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Lja1g0007 286 PANTHER RING-H2 FINGER PROTEIN ATL3 9 280 - -
Lja1g0007 286 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 280 IPR044675 -
Lja1g0007 286 SMART ring_2 99 140 IPR001841 -
Lja1g0007 286 CDD RING-H2_EL5_like 98 141 - -
Lja1g0007 286 Pfam Ring finger domain 98 141 IPR001841 -
Lja1g0007 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 147 IPR013083 -
Lja1g0007 286 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0007 Lja-Chr1 72590 74013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0007 22 261 C3H Transcription Factor Family AT1G53820 37.838 3.46e-51 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0007 - - lja:Lj1g3v5062680.1 520.005