Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1416 ATGAGTGCTTTCAACGGCGATGAAACTGCTCCCTTTTTCGGCTTCCTTGGAGCAGCGGCTGCCCTCGTTTTCTCCTGTATGGGGGCCGCTTATGGCACTGCAAAAAGTGGCGTTGGAGTTGCCTCGATGGGCGTCATGAGGCCGGAACTTGTTATGAAATCCATAGTGCCCGTTGTAATGGCTGGTGTCTTGGGTATTTATGGTTTGATCATTGCGGTCATCATTAGCACCGGCATTAACCCCAAGGCCAAATCCTATTATCTCTTCGATGGATACGCCCACCTCTCTTCCGGTCTTGCTTGCGGTCTTGCTGGTCTTTCTGCTGGCATGGCCATTGGTATTGTAGGCGATGCTGGTGTTAGGGCGAATGCTCAACAGCCCAAGCTTTTTGTTGGAATGATTCTCATTCTCATATTTGCTGAGGCATTGGCATTATATGGTCTTATTGTTGGTATCATCCTCTCTTCCCGCGCTGGCCAATCGAGAGCTGAGTAA 495 0.499 MSAFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1416 164 FunFam V-type proton ATPase proteolipid subunit 10 161 - -
Lele56g1416 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 160 - -
Lele56g1416 164 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Lele56g1416 164 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lele56g1416 164 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lele56g1416 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lele56g1416 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lele56g1416 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lele56g1416 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lele56g1416 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Lele56g1416 164 Gene3D - 10 161 IPR035921 -
Lele56g1416 164 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Lele56g1416 164 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Lele56g1416 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1416 Lele-ChrLele56 17203362 17204673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1416 1 164 Primary Pumps ATPases(2) AT2G16510 98.780 8.76e-112 313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0097 49 595817 596472 Lele56g1416 56 17203362 17204673 CCT
Lele50g0114 50 684980 685644 Lele56g1416 56 17203362 17204673 CCT
Lele51g0108 51 622791 623456 Lele56g1416 56 17203362 17204673 CCT
Lele53g0008 53 125818 126925 Lele56g1416 56 17203362 17204673 hybridization
Lele54g0007 54 146282 147612 Lele56g1416 56 17203362 17204673 hybridization