Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1406 ATGGGTCGGGGAAAGATTGAGATAAAGCTGATCCAGAACGCCACCAACAGGCAGGTCACCTACTCCAAGCGGCGCAATGGCATTTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTTTCCCTCATCATGTTCTCCAAAAACAATAAGATGCATGAATACACCACTCCGGGCCTCACAACCAAGAATATAATAGATCAGTACCAGAGGATTTTGGGGAATATCGATCTCTGGAGTGCCCAGTATGAGAGGATGCTCCAAAACATGAAGAAGCTGAAAGAGATTAACAATAAACTCAGAAGACAGATAAGGCACAGGATGGGTGAGGATTTAAATGATCTGGACTTCCAGCAACTGCGCAGTCTTGAGGAGGATATGGTTTCTGCCTCAGCGATCATACGTGAACGGAAGCTTCATGTGATCAAAACTCGGACTAGTACCAGCAAGAAAAAGGTCAAAAGCATGGAGCAGATGAACGAGAATCTGCTGCTTGAACTTGAAAAGTGTGTGATCCATTCACAATATATGGTGCACGAGGAAGGAGATCAGGAATCAGCAGTTACGGTGGCCACCGGTGTCTCCAACTTCCATGGACTGTGCCCACAGCAGCACCCAACACATATGAATCTTCACCATGATGGAATGGGATTGGACCTGTAA 669 0.4589 MGRGKIEIKLIQNATNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYTTPGLTTKNIIDQYQRILGNIDLWSAQYERMLQNMKKLKEINNKLRRQIRHRMGEDLNDLDFQQLRSLEEDMVSASAIIRERKLHVIKTRTSTSKKKVKSMEQMNENLLLELEKCVIHSQYMVHEEGDQESAVTVATGVSNFHGLCPQQHPTHMNLHHDGMGLDL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1406 222 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele56g1406 222 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele56g1406 222 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Lele56g1406 222 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Lele56g1406 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele56g1406 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele56g1406 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele56g1406 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Lele56g1406 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele56g1406 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lele56g1406 222 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Lele56g1406 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele56g1406 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele56g1406 222 Coils Coil 78 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1406 Lele-ChrLele56 17123037 17124437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1406 1 215 MADS-box Gene Family AT3G54340 49.537 3.15e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele56g1406 K-box 1.2e-17 No_clan