Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1385 ATGGTCCCCCTTTCTGTGTTTCGGTCATTTTCTACCGTTTCTTTTCTGGATCCTGAGTCTACCGCCTTCCATTTTGATCTCTTGGGTGCCCGCTTGAACATTCTCTGCGGTTTGCTTGCTCTTCCCTTTAATTCTTTCGGTTGTTTTGTGTTGGAAGGGAAATTGATATACTGTGCAAGCATGTCATTGAAAAGCATTGTTCGTGAACTTAAGGAAATGAGCGATGGCATGAGCAACATGTCAAAGCGAGGTGCAGAATGTAGGCAATGGCATAGTCGAAAAGCAAAATCACATATTGCTCCATATTGCACCTTACCTCCAGTTGATTCCATTCAACAAGGACAGTGGGCAAATCTACCTCCAGAATTGCTTTTGGACATTATTCAGAGGGTGGAAGAGAGTGAGACAACATGGCCGGCACGAGTTGTCGTTGTTTCATGTGCTTCAGTATGTAAATCATGGAGAGACATTACAAAGGAAATTGTCAAGGCTCCTGAGCAATGTGGGAGACTCACATTTCCTGTCTCAGTGAAGCAGCCGGGTCCTCGTGATGCACCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATACCACTTGTATTTTGGTCTTGTTCCATCGGAAAATGAGAGAGCCAAGTTGTTATTAGCTGCAAAGAAGATAAGAAAACCAACAGCCACAGAGTTTGTTATATCCTTTATTGCAGATGATTTTTCTCGGGCCAGCAGCACATATCTTGGTCCAATTTTTTGGGAACCAAGTTTGGCATATGCGATAGCCGACCTCCACAGAAAGCCAGCATTCAAGCAAATAATCATTCTAGCAGCAAATTCCACTCAAAGCAGAAGAATGCACTGCATTTTGAACTCCATACCTATGTCGGCTATTCAGGAAGGAGGCAGTGCCCCAACTCCAACAACTCTTCCGCAATTTTCTTCCTCACCAGTAGTGAAAGGAAAATATTCAACTACAGATTTAAACTCCGCAAACTTACTAGATCCACTGGCATCGAGTCAGGGCTCAGTTGAGCCTCTTGTTCTTAAAAACAAGGCTCCCAGATGGCATGAGCAACTGCAGTGTTGGTGCCTAAATTTCAAGGGTCGCGTCACTGTGGCTTCTGTGAAGAATTTCCAGCTTTTATGTGCTGGGCAGCATTTTGGTTTGGCCCTTCAAATAGGATCGATTTAG 1194 0.4397 MVPLSVFRSFSTVSFLDPESTAFHFDLLGARLNILCGLLALPFNSFGCFVLEGKLIYCASMSLKSIVRELKEMSDGMSNMSKRGAECRQWHSRKAKSHIAPYCTLPPVDSIQQGQWANLPPELLLDIIQRVEESETTWPARVVVVSCASVCKSWRDITKEIVKAPEQCGRLTFPVSVKQPGPRDAPIQCFIRRNRETSTYHLYFGLVPSENERAKLLLAAKKIRKPTATEFVISFIADDFSRASSTYLGPIFWEPSLAYAIADLHRKPAFKQIIILAANSTQSRRMHCILNSIPMSAIQEGGSAPTPTTLPQFSSSPVVKGKYSTTDLNSANLLDPLASSQGSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLLCAGQHFGLALQIGSI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1385 397 Gene3D - 109 162 - -
Lele56g1385 397 Gene3D Tubby Protein; Chain A 175 397 IPR025659 -
Lele56g1385 397 PANTHER TUBBY-RELATED 105 395 - -
Lele56g1385 397 SUPERFAMILY Tubby C-terminal domain-like 165 396 IPR025659 -
Lele56g1385 397 ProSitePatterns Tub family signature 1. 367 380 IPR018066 -
Lele56g1385 397 SUPERFAMILY F-box domain 112 159 IPR036047 GO:0005515
Lele56g1385 397 Pfam Tub family 280 383 IPR000007 -
Lele56g1385 397 Pfam Tub family 177 251 IPR000007 -
Lele56g1385 397 Pfam F-box domain 116 162 IPR001810 GO:0005515
Lele56g1385 397 PRINTS Tubby superfamily signature 231 247 IPR000007 -
Lele56g1385 397 PRINTS Tubby superfamily signature 349 366 IPR000007 -
Lele56g1385 397 PRINTS Tubby superfamily signature 367 383 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1385 Lele-ChrLele56 16957086 16960423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1385 61 397 TUB Transcription Factor Family AT2G18280 51.852 7.66e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele56g1385 Tub 4.8e-26 CL0395