Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1383 ATGGGAACTGATCGTGGTGAAGTAGTGGAGACAGCGCCAAATATCCGCTCCTTTAAGGTCCATCGTAAAATGTGCACTGAATTATTGAGATTAGTTGATAGAATCTCTAGGATATTCCCAGATATTGAGGCAACACGTCCTCGATGCTCATCAGGAATACAATCTCTGTGCTTGCTAAACAGTGCAGTTGATAAAGCTAAACTACTTCTGCAGTATTGCTGCGAGTCCAGCAAACTCTACCTGGCTTTGACAGGAGATACGGTACTCTCAAGATTCCAAAAGGCAAGAAAATCATTGGAGCAAAGCTTAGGCCAAGTTCAGAGCTTCGTTCCAGTTATGTTGGCTGCAGAGATTTCTCAAATAATTGATAATCTTGCATGCATGACTATTGTATTGGATTCAGCTGAGGAAGAGGCTGGGAGGGTTGTAAAAGAATTACTTCAGCAAGGTTCTTCAACCTCAGACTCTATTGAAAATTCTGAAATTAAAGCTCTTCAGTTTGCTGCAGCAAGACTTAATATTACATCCCCAAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCTAGATAAAGTTGGACCAAATGATCAGACAAAAAAGATGATCTTGAGATTTCTCTTGTATCTATTGAAGAAGTATGGAAACTATATCACAGGAGAACAGATGGGAATGGTCTATCCTTATAGTGAAGGACCAATTGTACCTGAGAACAGCGGTCATCATTCTCGACATATCCATTATGTTGAACAAGAAAGATGCCGTAATTATGATGAATATGATACTCACAACAGTGACATGGGTAGAGTTGAACCGCCAGAAGAATACAAATGTCCAATATCTTCAAGATTAATGTATGATCCTGTCGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATACAAAAGTGGTTTGACGAGGGCAATGATACTTGTCCAAAAACCATGAAGAAACTGTCCGATATGTCATTGACTCCAAACACTGTTATGAAGGACTTAATATCCAAGTGGTGCAGAAATAATGGAGTTACACTTGCTGAGCCACAACAGCGAGCAAAAGAATTTCACTCATGGGAGGTTTCTTCAACTTCCATTAGGAGCTTTGGCAGTTCTATGAATGATCTGCACTTGCCACTAGATCTTAGCAGCATGTCAATTGGATCATTAGATTATAGTCAAGGTTCTGATTCCTCACATGCTAGGGTCACTAATGACTTAAATTTGATGTCGAAGGCGGCCAATGACAATTCTTGGAGTCCTCAACTTAATGTGCATGTGCATGACACCGATCTGATAATTCTGTCTAGATTCCATGACCTTGAATGGGATTCTCAATGCCAGGCCATTAAAGATCTGAAAGATCATTTGAAATGCAATTGCCAAGCTTCGTGTTCTGTGTCTTCTGAACATTTTGTTGAATTTCTCAACAGATTTTTGAGCAGTGCTTATGAACATCAAGATGTAAAAGCTCTGAGAACTGGAACTCAATTGTTGATGGAATTTGTGAATGACTGCGGAAAGGATCTATCTTATTTAAAAGAAGATACATTTGGCATGTTGGCAAGTTTCCTTGATTTGGAAGTGATAGGTGAAGCTCTTTCTATAATGGAAAAGCTATCCGCAAATCAGCACAACAAAGCTACAATTGCAACATCCAGTGTGCTCACTTCAATCTTAAAGATCCTGGGCTCTGACAGCAGAGAGTTCCAAGAACAAGCCATCCGAATATTGCATAATTTGTCCTTCAACAGTGAAAACTGCTCCCACATGGTGTCTCTGGGGTGCATCCCAAAATTGCTGCCCTTTTTCGAGGACCAGGCCCTTTTAAGATACTGTATAGGTACATTGAAAAACCTTTGTGATATTGAGGTGGGCAGGGTTTCTGTTGTGGGAACTAATGGATGCATATCTAGAGTTGCTGAGATACTTGACACCGGCAGTGTTGAGGAACAGGAGCATGCACTTTCTGTTTTACTCTCTTTATGCTCTCAACGTGAAGATTATTGTCAGTTAGTCATGTATGAGGGTGTTATCCCTTCTCTTGTCACCATCTCCATCAATGGAAGTGACAATGCAAAGGTGAGTGCATTGGAATTGCTCCGTCTCCTGGGGGATGTTCAATACGAAGAAGAGTCCATGAAACCAAGAATTGACACCCAAGGTTCTAACGATCATTCTCAAGAAAAGAAATCGTCAAAGACCTCTGGATTTCTGAAGAAACTATCACCATTCTCAAAAAGCAAGAGATGA 2256 0.4029 MGTDRGEVVETAPNIRSFKVHRKMCTELLRLVDRISRIFPDIEATRPRCSSGIQSLCLLNSAVDKAKLLLQYCCESSKLYLALTGDTVLSRFQKARKSLEQSLGQVQSFVPVMLAAEISQIIDNLACMTIVLDSAEEEAGRVVKELLQQGSSTSDSIENSEIKALQFAAARLNITSPKAILIEKRSIKKLLDKVGPNDQTKKMILRFLLYLLKKYGNYITGEQMGMVYPYSEGPIVPENSGHHSRHIHYVEQERCRNYDEYDTHNSDMGRVEPPEEYKCPISSRLMYDPVVIASGATYERMWIQKWFDEGNDTCPKTMKKLSDMSLTPNTVMKDLISKWCRNNGVTLAEPQQRAKEFHSWEVSSTSIRSFGSSMNDLHLPLDLSSMSIGSLDYSQGSDSSHARVTNDLNLMSKAANDNSWSPQLNVHVHDTDLIILSRFHDLEWDSQCQAIKDLKDHLKCNCQASCSVSSEHFVEFLNRFLSSAYEHQDVKALRTGTQLLMEFVNDCGKDLSYLKEDTFGMLASFLDLEVIGEALSIMEKLSANQHNKATIATSSVLTSILKILGSDSREFQEQAIRILHNLSFNSENCSHMVSLGCIPKLLPFFEDQALLRYCIGTLKNLCDIEVGRVSVVGTNGCISRVAEILDTGSVEEQEHALSVLLSLCSQREDYCQLVMYEGVIPSLVTISINGSDNAKVSALELLRLLGDVQYEEESMKPRIDTQGSNDHSQEKKSSKTSGFLKKLSPFSKSKR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1383 751 PANTHER U BOX DOMAIN-CONTAINING 23 713 - -
Lele56g1383 751 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Lele56g1383 751 SMART arm_5 667 707 IPR000225 GO:0005515
Lele56g1383 751 SMART arm_5 625 665 IPR000225 GO:0005515
Lele56g1383 751 SMART arm_5 585 623 IPR000225 GO:0005515
Lele56g1383 751 SMART arm_5 544 584 IPR000225 GO:0005515
Lele56g1383 751 SUPERFAMILY ARM repeat 521 710 IPR016024 -
Lele56g1383 751 SUPERFAMILY RING/U-box 264 347 - -
Lele56g1383 751 MobiDBLite consensus disorder prediction 715 737 - -
Lele56g1383 751 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Lele56g1383 751 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Lele56g1383 751 CDD RING-Ubox_PUB 277 319 IPR045210 -
Lele56g1383 751 Pfam Kinesin-associated protein (KAP) 490 647 - -
Lele56g1383 751 Gene3D - 446 741 IPR011989 -
Lele56g1383 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 347 IPR013083 -
Lele56g1383 751 MobiDBLite consensus disorder prediction 715 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1383 Lele-ChrLele56 16947839 16951443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1383 5 724 U-box Gene Family AT4G36550 38.251 3.38e-143 435
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0169 50 994012 995116 Lele56g1383 56 16947839 16951443 CCT
Lele49g0149 49 897070 899292 Lele56g1383 56 16947839 16951443 CCT
Lele56g1383 56 16947839 16951443 Lele56g1383 56 16947839 16951443 ECH
Lele55g1451 55 20707424 20710931 Lele56g1383 56 16947839 16951443 ECH
Lele53g0047 53 366582 371463 Lele56g1383 56 16947839 16951443 hybridization
Lele54g0046 54 400435 404068 Lele56g1383 56 16947839 16951443 hybridization