Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1380 ATGTCTGGTTGCGGCAGCTACGAGGGGCACGTGATGGGAGCGTGCTCATGTGGCATGTTTCACAGCCAGACCAATTCCTTCCCTATGCTATACGCCAACCACAATTCCTATGCCTATGACTACGACGATTCCGACGTGTACTCTTCTTCCTACACGCCCCCCTCCTCTTCCGTCGACTGCACGCTCTCTCTCGGCACACCTTCCACTCGTTTGACTCAAGACGAAGACAGGCGTGGCGATGGCGCCCGCAACAGCGACCGACGTCGCTCCGTCTCCAACATGTGCTGGGATTTATCACAGTCCAATCAATGTCACAGTAGCGGCAAGTCCGGCAAAGGCGGCTCCTCCTCCAACGATCCCCTTCTCGCCCGTCGCTGTGCAAATTGCGACACCACTTCAACGCCCCTTTGGAGAAATGGCCCCAGAGGACCAAAGTCACTATGCAATGCCTGCGGGATCAGATACAAGAAGGAAGAGAGGAGAGCCTCCGCTGCCGCCGCTGCCGCTACGGCTTCGGCGTCAGGCGGCGTTATGGAGTCTCAGGCGATGTACGGCCACCAGGACAATTACTGGTACGCGCAGTCGTACTCACTGGGCCAGTCGCCGGGAATGGTGGAAGACGGAAATGGAGACTCTGACAACGGCATGTCTTTCCTCTCATGGAGACTCAACGTAACGGACAGAACGAGCCTCGTCCATGACTTTACGAGATGA 714 0.57 MSGCGSYEGHVMGACSCGMFHSQTNSFPMLYANHNSYAYDYDDSDVYSSSYTPPSSSVDCTLSLGTPSTRLTQDEDRRGDGARNSDRRRSVSNMCWDLSQSNQCHSSGKSGKGGSSSNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAAAATASASGGVMESQAMYGHQDNYWYAQSYSLGQSPGMVEDGNGDSDNGMSFLSWRLNVTDRTSLVHDFTR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1380 237 MobiDBLite consensus disorder prediction 50 70 - -
Lele56g1380 237 CDD ZnF_GATA 125 157 IPR000679 GO:0006355|GO:0043565
Lele56g1380 237 ProSiteProfiles GATA-type zinc finger domain profile. 120 156 IPR000679 GO:0006355|GO:0043565
Lele56g1380 237 SMART GATA_3 120 176 IPR000679 GO:0006355|GO:0043565
Lele56g1380 237 MobiDBLite consensus disorder prediction 71 87 - -
Lele56g1380 237 ProSitePatterns GATA-type zinc finger domain. 126 151 IPR000679 GO:0006355|GO:0043565
Lele56g1380 237 Gene3D - 122 179 IPR013088 GO:0006355|GO:0008270
Lele56g1380 237 MobiDBLite consensus disorder prediction 50 89 - -
Lele56g1380 237 Pfam GATA zinc finger 126 160 IPR000679 GO:0006355|GO:0043565
Lele56g1380 237 PANTHER GATA TRANSCRIPTION FACTOR 18 12 237 IPR044272 GO:0003700|GO:0009908
Lele56g1380 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1380 Lele-ChrLele56 16919213 16920045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1380 16 237 C2C2-Gata Transcription Factor Family AT3G50870 39.100 1.11e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele56g1380 GATA 6.5e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0178 50 1040212 1050913 Lele56g1380 56 16919213 16920045 CCT
Lele51g0173 51 991765 1000252 Lele56g1380 56 16919213 16920045 CCT
Lele52g0176 52 1048549 1059126 Lele56g1380 56 16919213 16920045 CCT
Lele49g0159 49 953883 954746 Lele56g1380 56 16919213 16920045 CCT
Lele56g1380 56 16919213 16920045 Lele56g1380 56 16919213 16920045 ECH
Lele53g0052 53 407137 407976 Lele56g1380 56 16919213 16920045 hybridization
Lele54g0053 54 449670 450517 Lele56g1380 56 16919213 16920045 hybridization