Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1362 ATGACAACATATCACTCTTCTTCTTCTTCAGAGAGCAAGAGGCCGGTGATAACACACAACACCATTATGAATCAGAATCCTATTGAAGCTCACATGGCCATCTTCTCTCACCTTTGCCCACCCGCTTCTTACACTACTCAGATCATCCCTCAACAAGCGGAAGCTAAGCGGAGACGACGTCGTAAGAAGGAGAAAAACGAGGCAGTGGGAGCGAAGAAGAGGAAGCTAAGTGAGCAGCAAGGGAATCTTCTGGAGCTACACTTTGGGAACGAACATAAATTAGAGTCGGAGAGAAAGGACAGGCTGGCATTGGAGCTGGGTCTCGATCCTCGTCAGGTGGCCGTGTGGTTTCAGAACCGAAGGGCTCGGTGGAAGACTCAGAAGTTGGAAGAAGCCTACTCCAACCTCAAGAAACTCCATGAAACCACCCTCCTTGAGAAGGCCCACCTTGAAACTCAGAGGCAAGTGTCGAAACTGACGGAGCGGCTTTCGGACGCAGAGAAGGAGATCCAACGGCTGTTAGGGAGAGGTGAGAGATTGGTGTCGAACGATACAAGCAATAGCCCAAGCTCATCGCAGACAATGGAGGCTGTGGGGGACCCACTATTCTTTGGGGAATTCGGAGTCGAAGGTTATGATGTGGACGATGACGTCTTATTATACCCAACAGATCATTACATGAATTGCATGGAATGGCTCAGTTCGTACATGTGA 714 0.4958 MTTYHSSSSSESKRPVITHNTIMNQNPIEAHMAIFSHLCPPASYTTQIIPQQAEAKRRRRRKKEKNEAVGAKKRKLSEQQGNLLELHFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKTQKLEEAYSNLKKLHETTLLEKAHLETQRQVSKLTERLSDAEKEIQRLLGRGERLVSNDTSNSPSSSQTMEAVGDPLFFGEFGVEGYDVDDDVLLYPTDHYMNCMEWLSSYM 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1362 237 Gene3D - 68 135 - -
Lele56g1362 237 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Lele56g1362 237 CDD homeodomain 72 128 IPR001356 GO:0003677
Lele56g1362 237 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Lele56g1362 237 Pfam Homeodomain 72 125 IPR001356 GO:0003677
Lele56g1362 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 191 IPR045224 GO:0003700
Lele56g1362 237 PRINTS Lambda-repressor HTH signature 107 123 IPR000047 GO:0003677
Lele56g1362 237 PRINTS Lambda-repressor HTH signature 98 107 IPR000047 GO:0003677
Lele56g1362 237 SUPERFAMILY Homeodomain-like 72 134 IPR009057 -
Lele56g1362 237 Coils Coil 149 183 - -
Lele56g1362 237 MobiDBLite consensus disorder prediction 51 75 - -
Lele56g1362 237 SMART HOX_1 70 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1362 Lele-ChrLele56 16778111 16779582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1362 24 237 Homeobox Transcription Factor Family AT2G18550 47.368 4.21e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele56g1362 Homeodomain 2.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0206 51 1165713 1167439 Lele56g1362 56 16778111 16779582 CCT
Lele49g0189 49 1129608 1132689 Lele56g1362 56 16778111 16779582 CCT
Lele56g1362 56 16778111 16779582 Lele49g0183 49 1105729 1110925 CCT
Lele56g1362 56 16778111 16779582 Lele51g0200 51 1130663 1136197 CCT
Lele56g1362 56 16778111 16779582 Lele52g0200 52 1194294 1200120 CCT
Lele56g1362 56 16778111 16779582 Lele56g1362 56 16778111 16779582 ECH
Lele53g0068 53 527291 528737 Lele56g1362 56 16778111 16779582 hybridization
Lele54g0069 54 567751 569204 Lele56g1362 56 16778111 16779582 hybridization