Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1354 ATGGCGAGTGGGTTTGGGGAATCGACGAGCACGTCTTGTCAAAGTCCATCTTGCTCAGGGAACGATTCGAATGATGCTGGGGATTTTGAATGCAATATATGTTTCGATTTAGCCCAAGACCCAGTTATCACTCTGTGTGGTCATCTATTCTGTTGGCCATGTCTCTACCAATGGCTTCATCATCACTCGCATTCTCAAGAATGTCCAGTTTGTAAGGCTCTTGTACAGGAGGAAAAACTGGTTCCATTGTATGGAAGGGGTAAAACACAGACTGATCCCAGAACAAAGTCGTACCCTGGAATGGAGATTCCCCGCCGCCCTGCAGGGCAGAGGCCTGAAGCACCGCCTGTACCAGAAGCCAATCCGTTTGGAAATTATGGGTTTGGATTGATGGGAGGATTTATACCAACGGCAACAGCAAGGATGGGAAATTTCACCCTTTCTACGGCCTTTGGTGGCTTTATCCCATCGCTTCTTAATATTCAATTCCATGGTTTTCAAGATGCCACTGTCTATGGAACAACCTCTGGTTATCCGTTTGGGTTTAATGCCTTTCATGGAGGACATGCACGCGATTTCACCCACCCAACTGGTCAGGGGAATCGGCATGAAGACAGTGTTTTGAAGAATCTCTTTTTGTTGGTTGGTGTACTCGTCCTCCTTGCTTTCATTTTTGGGTAG 681 0.4684 MASGFGESTSTSCQSPSCSGNDSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYQWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPRRPAGQRPEAPPVPEANPFGNYGFGLMGGFIPTATARMGNFTLSTAFGGFIPSLLNIQFHGFQDATVYGTTSGYPFGFNAFHGGHARDFTHPTGQGNRHEDSVLKNLFLLVGVLVLLAFIFG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1354 226 CDD RING-HC_AtRMA_like 29 73 - -
Lele56g1354 226 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 14 85 - -
Lele56g1354 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 221 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele56g1354 226 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Lele56g1354 226 SUPERFAMILY RING/U-box 27 84 - -
Lele56g1354 226 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Lele56g1354 226 SMART ring_2 31 71 IPR001841 -
Lele56g1354 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 94 IPR013083 -
Lele56g1354 226 MobiDBLite consensus disorder prediction 86 114 - -
Lele56g1354 226 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1354 Lele-ChrLele56 16718828 16719508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1354 21 225 C3H Transcription Factor Family AT2G23780 61.502 4.64e-90 263