Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1322 ATGGTGAAGTGGTGGCGCTCCGCCGCCGGTAACCTCCGAGCGGTGGCTACTAGCCGTTGGGAGTACTCGTTCTTATTGAGATTCCAATACGCTTCCTACCACACGATCCAAGCTATCCCAAGGGAGTGCACTGGTAGTCGAGTCTCTGCTAGAGACAGATTGCAAGGCCGAATTCCCGCCGTTGTTGAGTACCAGAATCTTCTTAGTAAAAATGATGTCGTCCAATCGGCGTCGAGGAAACGTTTGCTTACCACAGAGAGGAAGCAGATTAAGGCCATCCTCAAATCCGTGGACCTTCATTTCTTCTACTCGACCCGGTTTCCTCTCCAGATCCGTGCGGGCTCTGGATCTTCCCATATGCTCGAGTCTGGAACTGTGCTACCGATTAAGATTCATAGGGACGAAGAGAGTGGGAAAATTCTAAATTTAGTGTTTGTTTGGGCTGATGATGGGCTGGACTTGAAGGTGGATGTGCCTGTAGTTTTTAAAGGAGAAGATGTTTGCCCTGGCTTGCAGAAAGGTGGCTGTTTGAACAGGATCCGAACTAATCTGAAATTTCTTTGTCCATCTGAGCACATCCCATCAAAAATTGAGGTGGATGTGAGCAATCTAGATATTGGAGATAGGGTGTTCATGCGTGATATTGAGGTTCATCCATCCTTAAAGCTTCTGAGTAAGAATGAAAACATGCCTGTATGTAAAATAGTTCCCACAATGTTGGAAAACAAAGAACCTGTTCCTGCTGACGACCCGCAACATTCTCTTGGTCCTCGCTCAATGCCAAAACCAAGTGAAGTTGGGGAAATTGTTCTAGGTACTGTCATTACTGTTCGTACGGGACCATTTCAAATCATCCCAAGAATATCTTGTTTTCTGTGTGGTTACTCCTGGTGCGTTGAACCAGAATGGTCCATTTTGGCCTATGCTTTTTTTAAGGATGGCAAGACAGCAAACGAGACTGAGGCTAATAATTTGCCGTCACCTTTTGAGCCCCTTCAAAACATCATTGACAAGTTCACCAATAAGGGACTTGCTGTTAATGATGTAACTACCCTCTCAGTTTCCATGGAGAAGATGGGACGCATTGGTGTTCTCACTGGACAACAATGTGAAGTCAGGAAGACTACAAGTGTTCGAAGGAAAATGGTGAATCCAAGATGCTATCTGGACATTAGCATTGGAGGAGAGTTAGAGGGTAGGATTGTGATCGAACTCTTCAAAGACGTCGTCCCCAAGACTGCCGAGAATTTCAGGGCTCTCTGTACTGGTGAGAAGGGCCTCGGTCCCAACACCGGAGTTCCCCTTCATTACAAGGGAGTCCGTTTTCATCGCGTCATTAAAGGTTTCATGGTGCAAGGTGGAGATATCTCAGCTGGCGATGGCACTGGAGGAGAATCCATTTATGGCTTGAAATTTGAGGATGAGAATTTTGAGTTGAAACATGAGAGGAAAGGGATACTGTCGATGGCTAATTCAGGTGCCAACACCAATGGATCGCAATTTTTCATTACTACCACTCGGACTCCTCATTTGGATGGAAAGCACGTGGTGTTTGGAAAGGTGATAAAAGGAATGGGTTTTGTGCGTTCTATTGAACATGTTACCACTGGGGAAGGTGACTGCCCCACCCAAGATGCCATCATTGCTTCTTGTGGAGAAATAGCTGAAGGGGATGACGATGGAACCATAAACTTCTTTAAAGATGGCGATACTTTTCCTGATTGGCCAGCTGACCTAAGCGTGAAGCCAGATGAAATTTCTTGGTGGATGGAAGCTGTTCATTCTATCAAAAGTCTGGGAAATGAACAGTATAAGAAGCAAGATTTTAAGTCTGCTCGTCGCAAGTATCGTAAAGCTTTGCGCTATTTGGATGTCTGCTGGGAAAAGGACGACATTGATGAAGAGAAGAGCTCTGCTTTAAGGAAGACAAAATCTCAAATTTTTACCAACAGTTCGGCTTGTAACTTGAAATTAGGCGATCCACAAGCAGCATTGTTGGATTCAGATTTTGCATTGCAGGATGGAGATAATGCAAAGGCCCTGTTCCGCAAAGGCCAGGCATGCATGGCACTCAATGACCTGGATGCTGCCTTTGAAAGCTTTGGAAAAGCATTAGAGTTGGAGCCAAATGATGGAGCAATTAAGAAAGAGCTTGCAGCTGCAAGGAAAAAGGTTGCTGATAGACGTGACCAAGAGAAAAAAGCTTATTCCAGAATGTTCAAATAG 2226 0.4515 MVKWWRSAAGNLRAVATSRWEYSFLLRFQYASYHTIQAIPRECTGSRVSARDRLQGRIPAVVEYQNLLSKNDVVQSASRKRLLTTERKQIKAILKSVDLHFFYSTRFPLQIRAGSGSSHMLESGTVLPIKIHRDEESGKILNLVFVWADDGLDLKVDVPVVFKGEDVCPGLQKGGCLNRIRTNLKFLCPSEHIPSKIEVDVSNLDIGDRVFMRDIEVHPSLKLLSKNENMPVCKIVPTMLENKEPVPADDPQHSLGPRSMPKPSEVGEIVLGTVITVRTGPFQIIPRISCFLCGYSWCVEPEWSILAYAFFKDGKTANETEANNLPSPFEPLQNIIDKFTNKGLAVNDVTTLSVSMEKMGRIGVLTGQQCEVRKTTSVRRKMVNPRCYLDISIGGELEGRIVIELFKDVVPKTAENFRALCTGEKGLGPNTGVPLHYKGVRFHRVIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGILSMANSGANTNGSQFFITTTRTPHLDGKHVVFGKVIKGMGFVRSIEHVTTGEGDCPTQDAIIASCGEIAEGDDDGTINFFKDGDTFPDWPADLSVKPDEISWWMEAVHSIKSLGNEQYKKQDFKSARRKYRKALRYLDVCWEKDDIDEEKSSALRKTKSQIFTNSSACNLKLGDPQAALLDSDFALQDGDNAKALFRKGQACMALNDLDAAFESFGKALELEPNDGAIKKELAAARKKVADRRDQEKKAYSRMFK 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1322 741 Gene3D - 373 560 IPR029000 -
Lele56g1322 741 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 26 239 - -
Lele56g1322 741 FunFam Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein 151 238 - -
Lele56g1322 741 FunFam peptidyl-prolyl cis-trans isomerase D 591 741 - -
Lele56g1322 741 Gene3D Peroxidase, domain 2 326 353 - -
Lele56g1322 741 SMART tpr_5 678 711 IPR019734 GO:0005515
Lele56g1322 741 SMART tpr_5 593 626 IPR019734 GO:0005515
Lele56g1322 741 ProSiteProfiles Plant heme peroxidase family profile. 301 555 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lele56g1322 741 SUPERFAMILY Ribosomal protein L25-like 40 237 IPR011035 GO:0006412
Lele56g1322 741 Pfam Ribosomal protein TL5, C-terminal domain 154 237 IPR020057 -
Lele56g1322 741 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 388 553 IPR002130 GO:0000413|GO:0003755
Lele56g1322 741 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 437 454 IPR020892 GO:0003755|GO:0006457
Lele56g1322 741 Pfam Tetratricopeptide repeat 678 711 IPR001440 GO:0005515
Lele56g1322 741 Gene3D - 312 325 - -
Lele56g1322 741 CDD cyclophilin_ABH_like 385 552 - -
Lele56g1322 741 SUPERFAMILY Cyclophilin-like 378 554 IPR029000 -
Lele56g1322 741 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 500 512 IPR002130 GO:0000413|GO:0003755
Lele56g1322 741 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 485 500 IPR002130 GO:0000413|GO:0003755
Lele56g1322 741 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 442 454 IPR002130 GO:0000413|GO:0003755
Lele56g1322 741 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 513 528 IPR002130 GO:0000413|GO:0003755
Lele56g1322 741 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 405 420 IPR002130 GO:0000413|GO:0003755
Lele56g1322 741 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 389 552 IPR002130 GO:0000413|GO:0003755
Lele56g1322 741 CDD Ribosomal_L25_TL5_CTC 35 100 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele56g1322 741 SUPERFAMILY TPR-like 592 737 IPR011990 GO:0005515
Lele56g1322 741 Gene3D Ribosomal protein L25, beta domain 153 230 IPR037121 -
Lele56g1322 741 FunFam Peptidyl-prolyl cis-trans isomerase D 375 559 - -
Lele56g1322 741 Gene3D Tetratricopeptide repeat domain 593 741 IPR011990 GO:0005515
Lele56g1322 741 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Lele56g1322 741 SUPERFAMILY Heme-dependent peroxidases 313 377 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1322 Lele-ChrLele56 16492798 16503171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1322 398 548 U-box Gene Family AT5G67530 45.395 6.35e-31 126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele56g1322 56 16492798 16503171 Lele49g0248 49 1444066 1445650 CCT
Lele56g1322 56 16492798 16503171 Lele50g0261 50 1515896 1529110 CCT
Lele56g1322 56 16492798 16503171 Lele51g0258 51 1465097 1470995 CCT
Lele56g1322 56 16492798 16503171 Lele52g0266 52 1549683 1551274 CCT
Lele54g0110 54 881742 889281 Lele56g1322 56 16492798 16503171 hybridization