Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1309 ATGACGCAGCGGACGGTGCCGGCCCCGTTTCTGACGAAGACGTACCAATTGGTGGATGATGAGCGGACCAACGACGTGATATCGTGGAGCGAAAGCGGGGACACATTCGTGGTGTGGAAGCAAGCGGATTTCGCCAAAGACTTGCTTCCCAATTATTTCAAACACAACAATTTCTCCAGCTTCGTTCGTCAGCTGAACACCTATGGATTCCGAAAGATAGTCCCCGACAAATGGGAATTCGCGAACGAATATTTCAGGCGAGGACGCAAGGAGCTCCTCTCCGAGATCAAACGCAGGAAGACTCTCACACAGTCCTCCGGGAAGTCCGGCAGCGGCGGAGGCGGCAATTCCGCATCGAACTCCGGAGCCGGTGACGACGTGGGATCCACCTCCACTTCGTCGACCGATTCGAAGAATAACCCCGCGGGGTCGGCAGAGACGAAAACGGCCCCGGAATACGCAGAGTTATCGGGAGAGAACGAGAAACTGAGAAAAGATAACGAAATGCTGAGCTCAGAGCTGGCGGAAGCGAAGAAGCAATGTGAGGAGCTGGTGGGTTTTCTGACGGAGTACCTGAAAGTGGGGCCCGATCAGATAAATCGTATAATGCGGCAAGGAACAAGTGGGTCCAGCTGCGAAGAAGGTGGAGGACAAGAAGATGAAGACGAAACAAAGGTGGTAGGTGAAGGCGGAGAAAGTCTAAAACTGTTTGGGGTTTGGTTGAGAGGGGAGCAAGAAACGACGAAGGAGGAGGAGAAAATGAGGAGCAACAACAAGAAGAGAGGTCGCGAAGACCAAATGGCCTTTGGTGGGACCCACCGATCAAAGGAACTGAAGGCTCTTCATTTTGGTGCTTCTCCTGTGAAGGTCATGATCAATTGA 882 0.5272 MTQRTVPAPFLTKTYQLVDDERTNDVISWSESGDTFVVWKQADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFRRGRKELLSEIKRRKTLTQSSGKSGSGGGGNSASNSGAGDDVGSTSTSSTDSKNNPAGSAETKTAPEYAELSGENEKLRKDNEMLSSELAEAKKQCEELVGFLTEYLKVGPDQINRIMRQGTSGSSCEEGGGQEDEDETKVVGEGGESLKLFGVWLRGEQETTKEEEKMRSNNKKRGREDQMAFGGTHRSKELKALHFGASPVKVMIN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1309 293 Gene3D - 146 189 - -
Lele56g1309 293 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele56g1309 293 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele56g1309 293 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele56g1309 293 Coils Coil 153 180 - -
Lele56g1309 293 MobiDBLite consensus disorder prediction 103 146 - -
Lele56g1309 293 MobiDBLite consensus disorder prediction 96 164 - -
Lele56g1309 293 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele56g1309 293 FunFam Heat stress transcription factor B-4 2 100 - -
Lele56g1309 293 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele56g1309 293 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 242 IPR027725 -
Lele56g1309 293 MobiDBLite consensus disorder prediction 203 229 - -
Lele56g1309 293 MobiDBLite consensus disorder prediction 245 275 - -
Lele56g1309 293 Gene3D - 2 101 IPR036388 -
Lele56g1309 293 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele56g1309 293 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1309 Lele-ChrLele56 16340901 16342844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1309 3 285 HSF AT4G36990 54.386 5.84e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele56g1309 HSF_DNA-bind 4.5e-33 CL0123