Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1299 ATGGAAACAGCCCCGAATCTCGATTCCAATTCTCATTTTGATCTCATCAACTTTGGTGCTTCGGGTTTCACTGGCAAATATGTTGTCAGAGGAGCTCTCAAATTCCTCAACACCCTTTTCTCCCCTTGGATTCTAGACTTCATGGGTGTAAGTTTTGCATATGTTGCTGTTTATGCTGCATTTGCAGTATGTATTGGACTATTGGGGTTTTTCGGATGCATTTTGTCAGCTTCAGTTACTGTATTTGATAATGTGTTTCCTGTTGTGTCTTGCGATATTTCAGTTGTGAATGTTAATAATGCTGAATGTCTGGATACTGTGCGAGGAATGAGTCACTCGAATTGTAATCCTAACAGCCAAAACAAGGTCAATAATCAGTCCACTGAAGCATTGCAATTGCTTCCTACTGCAAGCTCCCTTACTGCAGGTGATCAAAGGTTCCCTGATCAGGTTTCAGGGTCAAATCATGTCGGTTATAGAGAGAGTATAAATATTGTTCCGAATAATGATCAAAGTGCTGCTTTTTGTCCTCATGAATCATCTGACGCATTGAGGTTTTCTTCTTTAACTTCCCTTACGGGAAATGTTAGAAGGTTCCCAGATGGGCTTTCTGGATCAAGTGATCTCCATTGTCAAGCAAGTGAGAGTTCTAGCACAGCTGCACAAACTGGAATTTCCAAACGCCGGGTTTCTGAAGTCTGTGGCAGCAATGGTCTAAACATATCTACTCCATGTACTAGTCCTGTTAATCATCACGAACAGTCTGAGACTATTATTGGTCATGGTACTATAAGGCCAGTTTCTGATGTACAGCATCTGAATGCAGCAAGACTATCTGAAAACTTCCGTAGGAACATTCATCATCATACAGCTGCAAATCAACAAACTTTTCTACCAACCAGCATTTGGTCATCAAGTAGCACGAGGAATGCTCATATCCAGTTACCCAGTAGTAGTGGGTTTTCTTCATTTTTGCCTATCTATACTGCAGTGGAAAGTGAGGCTGTGGCACCCCTTCATTACCCAAGAAACATAATTGAAAGCACCACGATCGGCCACCAAATTGGAAGGAGAAATAGGGTACACGATGCAAGAAACTCGCATTCTGTTAATGGAACTGCAAACCTCCATGGAGATTTCTGTCCCCTTCATGGTTTTGCTTCTGATATAATTCATCCAGCAAATGCCCCTACTTGGTTCCCAGGGTTCAATTTTGCTGATCGTTATGCGCCGACACCATCAAGGATTGTAAACCATCCTGTGCTTGCAACTACTGGTTTCCCTAGGCATAGTCCTAGCCCAGCAGATTCAGGCCCTTCAGCAGTCTTACAGGAAATGGGCTTTGCTGTTGGATTTGGTAATGCCGTATCTCAGAATCAGTATTCATCAGGAGCAAGATCTGAGAACCATACTGCTTCTAATTTTACATGGTCACTTGCTAATGCTCGAAATAGAATGTCGCTGAGGCCTGAGAATCTGCACCCATCAGAAGCAAGATTCGAGAATGAAGATGGTAGCTATTATCATTATTTTTGGTCACCTGCTGATGCTGAGTATAGAAGGAGGATGAGTCTTGAGACGATCCCTCGGGAATTGAGGATGTTGGACCAATCAGTTGTAATGGATATGCTTCGGGCTCATGACAGTGTAGACGAGGATGTTGCTGACCTAGCGGAGCCTGGTAGCGTACCAGAGATGGGGCTGGGTGAGGAAGTGATTCTCGGCCACCTTTGGCAGGAAAATTTCCAGCCCAATGCAGATGAGTCTGAGGGAAATGAATGTTGCTGCATATGTCAGGAGGATTACCAAGAAAATGAAGTTCTGGGTAAGCTGTGGTGTGGCCACAGATTTCATGTAGACTGTATTAAGCCATGGCTGGTGCTGAAGAACATCTGCCCCATTTGCAAACAAATTGCAATCCCCCTTTATCTTTGA 1935 0.4357 METAPNLDSNSHFDLINFGASGFTGKYVVRGALKFLNTLFSPWILDFMGVSFAYVAVYAAFAVCIGLLGFFGCILSASVTVFDNVFPVVSCDISVVNVNNAECLDTVRGMSHSNCNPNSQNKVNNQSTEALQLLPTASSLTAGDQRFPDQVSGSNHVGYRESINIVPNNDQSAAFCPHESSDALRFSSLTSLTGNVRRFPDGLSGSSDLHCQASESSSTAAQTGISKRRVSEVCGSNGLNISTPCTSPVNHHEQSETIIGHGTIRPVSDVQHLNAARLSENFRRNIHHHTAANQQTFLPTSIWSSSSTRNAHIQLPSSSGFSSFLPIYTAVESEAVAPLHYPRNIIESTTIGHQIGRRNRVHDARNSHSVNGTANLHGDFCPLHGFASDIIHPANAPTWFPGFNFADRYAPTPSRIVNHPVLATTGFPRHSPSPADSGPSAVLQEMGFAVGFGNAVSQNQYSSGARSENHTASNFTWSLANARNRMSLRPENLHPSEARFENEDGSYYHYFWSPADAEYRRRMSLETIPRELRMLDQSVVMDMLRAHDSVDEDVADLAEPGSVPEMGLGEEVILGHLWQENFQPNADESEGNECCCICQEDYQENEVLGKLWCGHRFHVDCIKPWLVLKNICPICKQIAIPLYL 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1299 644 CDD RING-H2_PA-TM-RING 594 636 - -
Lele56g1299 644 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 207 640 IPR045191 GO:0061630
Lele56g1299 644 Pfam Ring finger domain 595 636 IPR001841 -
Lele56g1299 644 SMART ring_2 595 635 IPR001841 -
Lele56g1299 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 640 IPR013083 -
Lele56g1299 644 ProSiteProfiles Zinc finger RING-type profile. 595 636 IPR001841 -
Lele56g1299 644 SUPERFAMILY RING/U-box 594 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1299 Lele-ChrLele56 16253236 16261618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1299 308 640 C3H Transcription Factor Family AT2G15530 29.670 1.64e-19 91.3