Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1292 ATGGAAGTTGAATCAGGGGCTATAGGCGCCAAGAAGAGAGGGGTCGAAGGAGAGAGAAGGTACAAAGGTATTCGGATGAGGAAGTGGGGCAAGTGGGTCGCCGAAATCAGAGAACCCAATAAGCGTTCCAGGATTTGGCTCGGATCCTATTCTACCCCCGTCGCAGCCGCTAGAGCCTACGACACCGCAGTTTTCTATCTCCGAGGACCCTCTGCTCGCCTCAATTTCCCGGAGCTTCTAGCCGGAGAAGGCTGCGTGGCTGCAGCCGCCGGCGACTTGTCGGCGGCTTCGATTCGCAAGAAAGCCATCGAAGTCGGCGCCAGAGCGGATGCCCTTCAGGCGGCTCACCATCACCACCACCACCACCATGCGTCAGCGGAGGCAACGGAGCTTATACCTCGTGGTGTGGAGCGAGTTGACCTGAACAAGATGCCGGAACCGGAGAATCCGGAGTGTAACTGA 462 0.5801 MEVESGAIGAKKRGVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLAGEGCVAAAAGDLSAASIRKKAIEVGARADALQAAHHHHHHHHASAEATELIPRGVERVDLNKMPEPENPECN 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1292 153 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Lele56g1292 153 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Lele56g1292 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 150 - -
Lele56g1292 153 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Lele56g1292 153 MobiDBLite consensus disorder prediction 111 132 - -
Lele56g1292 153 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Lele56g1292 153 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lele56g1292 153 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Lele56g1292 153 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Lele56g1292 153 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Lele56g1292 153 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1292 Lele-ChrLele56 16170211 16170672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1292 7 151 AP2-EREBP Transcription Factor Family AT2G23340 62.092 7.10e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele56g1292 AP2 9.2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0309 50 1812410 1818960 Lele56g1292 56 16170211 16170672 CCT
Lele51g0304 51 1738087 1746136 Lele56g1292 56 16170211 16170672 CCT
Lele52g0319 52 1886069 1890511 Lele56g1292 56 16170211 16170672 CCT
Lele49g0294 49 1744225 1744788 Lele56g1292 56 16170211 16170672 CCT
Lele53g0143 53 1168762 1169217 Lele56g1292 56 16170211 16170672 hybridization
Lele54g0143 54 1233061 1233516 Lele56g1292 56 16170211 16170672 hybridization