Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1290 ATGACTCATCCCAGAACTCTCTTTATTCTCTTCTTGTGCTTCCCTCTCTTCACCACCGTCCTCTCCTATCAATCTTCTCCGGCTTCCTCCAAACTTCTCCTCTCTTCCGACGCCGTTTCTTTGCTCTCTTTCAAGTCCAAAGCCGACCTCGACAACAAGCTCCTCTATGCCCTTCATGAGCGCTTCGATTACTGTCAATGGCAAGGCGTCAAGTGCGCTCAGGGCCGAGTGGTTCGTTTCTACCTTCAGGGCTCTGGCCTTCGCGGCGTCTTCGCTTCCGATACCCTCTCTCGCCTCGACCAGCTTCGAGTCTTGTGCCTCCGTAATAACTCCCTCTCCGGTCCCATCCCCGATCTCTCTCCCCTCTTCAACCTCAAGGCTCTGCTCCTCGACCATAATTTCTTCACTGGTTCTTTACCTCCCTCGTTTCTTCTGCGTCATCACCTCCGTACTCTTTCTCTCTCTTATAACAACCTCACCGGTTCAATCCCTGTCGGGTTAGTTAATTTGGACCGTTTAGTTACCCTCCGCCTTGACTCGAACCGCTTTGATGGAACCGTTCCTCCGTTGAACCAGTCGTCCCTTCTTATCTTCAATGTCTCCGGCAATAACCTCACAGGGCCTATTCCGGCAACTCTCGCTCTTGCTCGATTCCACTCGGCGTCGTTTTCAGGGAATCCGGGTCTATGCGGGGACATTATTTCCAAAGCATGTGTTCATCCTAGGCCTCGAATCTTTGGTTCTTCTTCCAATGCCTCTGTCTCCTTGGGGCAAAGCGCTGAATCACAGGGTAACATCGACATTTCTTCGCTGACTAGTAAGAAGCACAAGACTAACGACCTGATTCTTGGGTCAACCATTGGTTCAAGGTCGGCAAGAGCGAAGCCTCTTCACTGGACATCATGCTTAAAGATAGCTGAAGACATAGCTCATGGACTTGCATATATACACCAAACATCAAGATTAATCCATGGCAACTTAAAGTCCTCTAATGTGGTTCTTGGGGTAGACTTCGAAGCTTGTGTTACAGACTATAGTTTGTTCCTCCTTGCAGACTCTTCATCCAGCGATGATCCTGATTCTGCTGCCTATAAAGCACCTGAAACTCGCAACACCAATCGCCCACCTACTTCTAAATCTGATGTCTATACATTTGGGGTGCTTCTTCTGGAGCTTCTAACCTCTAAATACCCTTCTCAGCATCCCTTCCTTGCTCCCGTGGATTTGCAGGATTGGGTCAGAGCAATGAGGAACGACTATGGTGCTGAAGATAAGCAACTAGGAATGCTCACAGAGGTTGCAAGTATTTGCACTGTCATATCACCTGAGCAGAGACCAGCTATGTGGCAACTCTTGAAGATGATACAAGAAATAAAGAAGAGTGTAACACTTGGAAGGCATAATTCTATATTTGGTTGGGATAGTGACAGCATGTTCAGTGAAGACTACCCTAGTAAGCCTCCAAAGTGTAAATTTCCGCAAGGTTTCTTCCACCCTAATGTCTACCCTTCTGGAACTGTCTGCCTGTCTATACTTAATGAGGACAGTGGATGGAGACCCGCTATAACTGTGAAGCAGATTCTTGTCGGTATACAAGACTTACTTGACCAGCCTAATCCTGCTGATCCTGCCCAGACAGAAGGCTATCATCTGTTCATCCAGTTATGGTTGATCGTTCTTAGAGCCACAGGAATTGGTGTTCAGCAGTGCTTAACCATGTTAAACGTGCAGGACGCTGTGGAGTATAAGAGAAGAGTGCGGTTGCAGGCAAAGCAATACCCAGCTCTTGTTTAG 1794 0.4794 MTHPRTLFILFLCFPLFTTVLSYQSSPASSKLLLSSDAVSLLSFKSKADLDNKLLYALHERFDYCQWQGVKCAQGRVVRFYLQGSGLRGVFASDTLSRLDQLRVLCLRNNSLSGPIPDLSPLFNLKALLLDHNFFTGSLPPSFLLRHHLRTLSLSYNNLTGSIPVGLVNLDRLVTLRLDSNRFDGTVPPLNQSSLLIFNVSGNNLTGPIPATLALARFHSASFSGNPGLCGDIISKACVHPRPRIFGSSSNASVSLGQSAESQGNIDISSLTSKKHKTNDLILGSTIGSRSARAKPLHWTSCLKIAEDIAHGLAYIHQTSRLIHGNLKSSNVVLGVDFEACVTDYSLFLLADSSSSDDPDSAAYKAPETRNTNRPPTSKSDVYTFGVLLLELLTSKYPSQHPFLAPVDLQDWVRAMRNDYGAEDKQLGMLTEVASICTVISPEQRPAMWQLLKMIQEIKKSVTLGRHNSIFGWDSDSMFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQLWLIVLRATGIGVQQCLTMLNVQDAVEYKRRVRLQAKQYPALV 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1290 597 Pfam Leucine rich repeat 124 183 IPR001611 GO:0005515
Lele56g1290 597 ProSiteProfiles Protein kinase domain profile. 154 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele56g1290 597 FunFam Probable inactive receptor kinase At5g67200 36 146 - -
Lele56g1290 597 Gene3D Ribonuclease Inhibitor 37 146 IPR032675 -
Lele56g1290 597 SUPERFAMILY UBC-like 478 553 IPR016135 -
Lele56g1290 597 MobiDBLite consensus disorder prediction 354 378 - -
Lele56g1290 597 ProSiteProfiles Leucine-rich repeat profile. 148 171 IPR001611 GO:0005515
Lele56g1290 597 Pfam Protein tyrosine and serine/threonine kinase 293 453 IPR001245 GO:0004672|GO:0006468
Lele56g1290 597 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 497 512 IPR023313 -
Lele56g1290 597 SUPERFAMILY Protein kinase-like (PK-like) 270 461 IPR011009 -
Lele56g1290 597 SUPERFAMILY L domain-like 44 231 - -
Lele56g1290 597 CDD UBCc 479 554 IPR000608 -
Lele56g1290 597 Pfam Ubiquitin-conjugating enzyme 476 551 IPR000608 -
Lele56g1290 597 Gene3D Transferase(Phosphotransferase) domain 1 283 470 - -
Lele56g1290 597 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 416 595 IPR000608 -
Lele56g1290 597 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 283 - -
Lele56g1290 597 SMART ubc_7 445 595 - -
Lele56g1290 597 FunFam Leucine-rich repeat receptor-like protein kinase 148 240 - -
Lele56g1290 597 Gene3D Ubiquitin Conjugating Enzyme 473 595 IPR016135 -
Lele56g1290 597 Gene3D Ribonuclease Inhibitor 147 240 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1290 Lele-ChrLele56 16148247 16155318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1290 288 471 Receptor kinase-like Gene Family AT3G50230 59.043 3.10e-66 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lele56g1290 PK_Tyr_Ser-Thr 8.7e-16 CL0016