Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1278 ATGGAGGCAAAGTGGGAAGGGGAAATTATTTGGAAAACATCACTGTCAAATAGCTGTGAATTACTGAATCAAAGAAGCAAAAGGGTGACGCGCAAGCTTTCTTCTCTCAAGTGGCTACCTTTGCCAATTCCAGGCTACCGTTTTGACCCACAAAACCAAACCCACACAAGCTTTCTTCTTCTTTTTCTTTATAATACGTCTTCATTTCTTTATCGACTAACCTTCTTCCTTCGTTCTTTATATGATCTGCGATTTCTGAAGGACATGAACATGGCCATTGATAGCAGGAAGGATATAGATCGGATCAAGGGCCCATGGAGCCCCGAAGAGGACGACTCCTTGCAGAAGCTGGTGGGAAAACACGGACCTAGGAATTGGTCCCTGATCAGCAAGTCCATTCCGGGTCGATCCGGCAAGTCTTGTCGGCTCCGATGGTGTAATCAGCTTTCTCCTCAGGTCGAGCACCGACCCTTCTCTCCGGAAGAGGATGAGACTATTATTAGGGCTCATGCCCGATTCGGCAACAAGTGGGCAACCATAGCCCGGCTTCTATCGGGTCGAACCGATAACGCCATCAAGAACCACTGGAACTCCACCTTGAAGCGCAAGTGTTCGTCCATGATGGTGGATGAGACCGCCACTGGCGCCGGTGGATTCGACGGAAGTTTCAGCCCCCAGCCACTTAAGAGATCGGTGAGCGCCGGAGCTGCTATGCCTGTGTCGACCGGGTTTTACGTAAACCAGCAGACGCCGAGTAGCCCATCCGGATCCGACGTTAGCGATTCCAGTGTGCCGGTAGCTTCTTCCTCCCATGTTTACCGGCCTGTGGCGAGAACCGGCGGAGTTCTACCACCCGTAGAAACGACGTCGTCATCGAATGAACCTACAACTTCATTATCCCTATCACCTCCTGGAGTGGACTCTTCAGAAGTCTCGAATCGCGCATCAGAGTCAACACAAGCAGCTACGTTAGCGAATACTGTGCGTTTATTACCGGCAATGGTTTCAGCCGTGGCGTCCTCCACAGCCCCGCCGCTGCCTCCAGCAGGCGCGGCGATGTCGGCGCAGCAGCAGGTTCCTTTGGGCCTAGGCCATAGGAGGGGTGGTGACGGCGGGTCATTGGCGTCACCGGCTGCAAACCCTAATGGGGCGGCGCCATTCAATTTCAGTGCAGAGTTGCTAGCTGCGATGCAGGAGATGATAAAGACGGAGGTGAGGAGTTATATGGCGGGACTAGAAAAGAGGCAGCTTATGGATTTTCGAACGTTTCAGTGA 1275 0.5255 MEAKWEGEIIWKTSLSNSCELLNQRSKRVTRKLSSLKWLPLPIPGYRFDPQNQTHTSFLLLFLYNTSSFLYRLTFFLRSLYDLRFLKDMNMAIDSRKDIDRIKGPWSPEEDDSLQKLVGKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMMVDETATGAGGFDGSFSPQPLKRSVSAGAAMPVSTGFYVNQQTPSSPSGSDVSDSSVPVASSSHVYRPVARTGGVLPPVETTSSSNEPTTSLSLSPPGVDSSEVSNRASESTQAATLANTVRLLPAMVSAVASSTAPPLPPAGAAMSAQQQVPLGLGHRRGGDGGSLASPAANPNGAAPFNFSAELLAAMQEMIKTEVRSYMAGLEKRQLMDFRTFQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1278 424 MobiDBLite consensus disorder prediction 284 319 - -
Lele56g1278 424 Gene3D - 102 154 - -
Lele56g1278 424 CDD SANT 157 200 IPR001005 -
Lele56g1278 424 MobiDBLite consensus disorder prediction 245 269 - -
Lele56g1278 424 Pfam Myb-like DNA-binding domain 106 164 - -
Lele56g1278 424 PANTHER MYB PROTEIN-RELATED 96 292 - -
Lele56g1278 424 ProSiteProfiles Myb-like domain profile. 98 149 IPR001005 -
Lele56g1278 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 153 IPR017930 -
Lele56g1278 424 FunFam MYB transcription factor 103 154 - -
Lele56g1278 424 MobiDBLite consensus disorder prediction 245 319 - -
Lele56g1278 424 CDD SANT 105 147 IPR001005 -
Lele56g1278 424 Gene3D - 156 214 - -
Lele56g1278 424 SUPERFAMILY Homeodomain-like 100 196 IPR009057 -
Lele56g1278 424 ProSiteProfiles Myb-like domain profile. 150 200 IPR001005 -
Lele56g1278 424 FunFam Transcription factor MYB44 157 203 - -
Lele56g1278 424 SMART sant 102 151 IPR001005 -
Lele56g1278 424 SMART sant 154 202 IPR001005 -
Lele56g1278 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 204 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1278 Lele-ChrLele56 16063291 16066769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1278 100 414 MYB Transcription Factor Family AT5G67300 55.031 2.12e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele56g1278 Myb_DNA-bind_6 4.5e-17 CL0123