Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1267 ATGTCTACCCAGGACCAACCACTCCTACTTGGCTTACGCGAGGATGAGGCGCCGGAAACCGCCTATGATTCGTCGGAGAAGATCATGGTCGTCGGGGCTGACGACTCCGACCCCGATAATTTCGGTCGGGTGCTGCCATTCTCATGGAAGAAGCTCTGGCTCTTCACTGGCCCTGGCTTTCTCATGAGCATCGCGTTTCTCGATCCTGGGAATTTGGAGGGTGATCTTCAGGCTGGTGCTGTTGCTGGATACTCACTTCTATGGCTCCTCATGTGGGCGACGGCTATGGGGCTTCTCGTTCAGCTCCTGTCAGCTCGGCTCGGCGTCGCCACCGGAAGGCACTTGGCTGAGCTCTGCAGAGAGGAGTACCCCACGTGGGCTAGGAGGGTGCTCTGGTTTATGGCGGAGTTGGCTCTAATTGGGGCTGACATTCAAGAGTTTTATTTTTCTTTTGATGGAGAACTATGGTGTGAGGAAACTGGAAGCACTTTTTGCGGTTCTCATTGCTGTCTTTTGGTTCCAAAACTTAGTTCCAAAACAATACAACAGGCTGTTGCAATTGTAGGTTGCGTTATCATGCCTCACAATGTGTTCTTGCACTCTGCTCTTGTTCAATCGAGGCAAATTGACTCAAGCAAGAAAGAACGAGTTCAAGAAGCTCTTAATTACTATACTATTGAATCCGCTGCTGCACTTGCGGTCTCCTTAGTCATTAACATATTTGTCACAACTGTGTTTGCCAAGGGTTTCTATGGTACTGAGCTAGCAAATAAAGTTGGTCTTGAAAATGCAGGGCAGTATCTTCAGCAGAAGTATGGTGGTGGACTTTTCCCGATCTTATATATATGGGCCATTGGGTTATTGGCAGCTGGCCAAAGTAGCACCATTACTGGCACTTATGCTGGACAATTTATTATGGGTGGTTTTCTAAATTTGAGGTTGAAAAAATGGGTCAGGGCGTTTATTACACGAAGTTGTGCTATCATCCCAACCATGGTCGTTGCTCTTGTCTTTGACACCTCTGAGGACTCACTAGATGTCCTAAACGAATGGCTCAATGTTCTCCAGTCAGTTCAAATCCCTTTCGCTCTTATTCCCTTGCTTTGTTTGGTGTCAAAGGAGCAGTTGATGGGGACTTTCAGGATTGGAGCTAGAGTGTCTGAAGACTTCATGGGGTTTGATTATAAATTCAATGCTCTGACTTATTGTACTAAGTGGCTTCTGAAATGGATACAGATTATTTCCTGGTTTGTGGCTGCTTTAGTGTTAGTCATTAACGGCTATCTGTTGGTGGAATTCTTATCCTCTGAAGTGCATGGAGCAGTGATTACCACCGTAGTGTCTGCATTTACAGTCATGAGGCTGGTTCTACTGTGGCAAGAGATCCTTCGACATTGCAACTTTTCAATTAAATTTACGGCTTCGAATCGTTTCGGATCCCTGTGCTTCGGTTTCTATAGCCGCCTAGGGTTTAGATGTCGTGCGATTGCTTACTGTGGTAGAGTTTCAGTGTGTTCACCAGTTTGTTGGTTTGTTTTTTGCCCCTTGCTGGATGTAGATTTGTTTGCTTCTGCAAAAGAATGGGATGAAATTAAGCAGCATTTCCTTGATCTTGAGACTGCATTGAAGAAGAAACTTGAAGAGCTTGAAGCTAAGGAGAGAGATTATGAAAATAAGGAAGCAGAAGTGCATACACAGCTCGAAGAGAGAGAGGTAGAGGTTGCTTCTAAAGAACAAGACCTTTTGAATCGCGTGCAGGAGCTAAAATACACTGCTGTTGCTGCCATTGTAGAGGCTCGTGCAAATCACCAGGCAACATCATTGGAGCCTGTAGATGAATGGGAGAACAGAGATAACAAGGTAAGAAGCTCTTTTGTCTTTTGTGAAGAACTGTCTATTGCACTTGAAAGTGCAACTGAAGCATCCCACTTGGTGCTGGATTCACTGGAGGGGTTTTACCCTACCAATGAAACTACCCAACTAGGAGATAAAATGGATGCTGCCCTTTGGGGCATGCGCAAGTCCCGTGTTATAATTATGAAAGCCTTCACCACCATGTTGGCAAGGGCTGAATCAGATACGGATCACCTTCTGAGCCCTGAAACCAAGCAGCAAGCCAAGGCAATTGCTGATGAGTGGAGGCTTAAGTTGGCTAGAGCAGGCACTGATGCTTCCAATGGAAATTCATTGGAGGCAGAGGCATTCTTGCAGCTCCTTTTGACTTTTAGGATTGCCTCAGAGTTTGATGAAGAAGAACTCTGCAAGCTTGTTCTTGCAGTTGCTCAACACAGGCAGGCTCCTGAGCTCTGCCGTTCTCTTGGGTTAACTCACAAAGCGCCAGATATTGTGGAATTGCTGATCAGTGATGGGAAACAAATCGTGGCTGCATACCTTAAGGACCTAAGGAGAAATTCGCAAGGAAAGGTTGGAGGTAGCGTTGCTGGTGAGAAGAATGATGCTAATGCCCAAGAGCTTGCGGCCCTTAAAGCTGTAATCAAGTGCGTTGAAGAATACAAGCTTGAGTCTGACTACCCACTTGATCCCCTTCAGAGGAGAGTTGCTCAACTAGACAAGTTGAAGACAACAGATAGAAAGAGAACTGGAGAATCTGGCAAATGTAAGAAGCTAAGGACCACTGGAGGATATTTTTTATTCCATCCATCAGTTGGTGGCGGTGCCGGTAGGTAG 2688 0.4602 MSTQDQPLLLGLREDEAPETAYDSSEKIMVVGADDSDPDNFGRVLPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAVAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLAELCREEYPTWARRVLWFMAELALIGADIQEFYFSFDGELWCEETGSTFCGSHCCLLVPKLSSKTIQQAVAIVGCVIMPHNVFLHSALVQSRQIDSSKKERVQEALNYYTIESAAALAVSLVINIFVTTVFAKGFYGTELANKVGLENAGQYLQQKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRAFITRSCAIIPTMVVALVFDTSEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQLMGTFRIGARVSEDFMGFDYKFNALTYCTKWLLKWIQIISWFVAALVLVINGYLLVEFLSSEVHGAVITTVVSAFTVMRLVLLWQEILRHCNFSIKFTASNRFGSLCFGFYSRLGFRCRAIAYCGRVSVCSPVCWFVFCPLLDVDLFASAKEWDEIKQHFLDLETALKKKLEELEAKERDYENKEAEVHTQLEEREVEVASKEQDLLNRVQELKYTAVAAIVEARANHQATSLEPVDEWENRDNKVRSSFVFCEELSIALESATEASHLVLDSLEGFYPTNETTQLGDKMDAALWGMRKSRVIIMKAFTTMLARAESDTDHLLSPETKQQAKAIADEWRLKLARAGTDASNGNSLEAEAFLQLLLTFRIASEFDEEELCKLVLAVAQHRQAPELCRSLGLTHKAPDIVELLISDGKQIVAAYLKDLRRNSQGKVGGSVAGEKNDANAQELAALKAVIKCVEEYKLESDYPLDPLQRRVAQLDKLKTTDRKRTGESGKCKKLRTTGGYFLFHPSVGGGAGR 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1267 895 Pfam Natural resistance-associated macrophage protein 73 147 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele56g1267 895 Pfam Natural resistance-associated macrophage protein 172 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele56g1267 895 Coils Coil 532 569 - -
Lele56g1267 895 Pfam Frigida-like protein 795 866 IPR012474 -
Lele56g1267 895 Pfam Frigida-like protein 627 796 IPR012474 -
Lele56g1267 895 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 171 459 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1267 Lele-ChrLele56 15972295 15978901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1267 15 467 Inorganic Solute Cotransporters AT1G47240 60.039 0.0 578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0343 50 1978306 1982916 Lele56g1267 56 15972295 15978901 CCT
Lele51g0339 51 1940149 1945057 Lele56g1267 56 15972295 15978901 CCT
Lele52g0350 52 2063062 2067736 Lele56g1267 56 15972295 15978901 CCT
Lele49g0325 49 1921308 1924029 Lele56g1267 56 15972295 15978901 CCT
Lele53g0166 53 1385059 1387746 Lele56g1267 56 15972295 15978901 hybridization
Lele54g0167 54 1439657 1443733 Lele56g1267 56 15972295 15978901 hybridization