Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1264 ATGGAATCTCAAATCCCAGAGAATTCAAACTCCAAGAGAATTCAAAAACTGCTTCCTTCTACGCCTACATGCACAAACTGTTCTTGTTTCTTCTGCAACATGTCTGAAACAGACCCTTTGGTCAAAAGAGCTAAACTCTCTCGTTGTCTCAAACAGATGCCTCTTAGGGATGACAAAGAACATGTCTTGGCCCTAAGCAGCATTTGGAGAATCGCCATGACTAAGCCAAACGACCCAGAATTTCCATGCTTGGGCATTTTCAGATGCATGGCCAAACTCATCCAAAAGGGTCTCAGAAATAAGGGTTGGCTTCTTAATTACCAGAACATTTACATCCCATATTACGCAGCTCATATCATTGGCTCTTATACCATGAACAAAGCTAAGTTTGCTGAAAAAGCAGTTAAGTCCAACGTTGTTGGACCATTAATCGAACTCCTACGAGGTAAGATCAGTTGGGTTGAACAGAGAGTTTCACTTCGAGCATTGGGTCACTTGGCAAGACATGAATCAACCTTTGAAGCTGTAGCAGAACACGAGGAAGAAATCATACAAGTAGCCATTGACATAGCTTCCACGTGCCTGTGTGAGGTATATAATAAATTTGTTGGCTTGGAGGAATCCCAGAGATTGGAGTATCATAGGAATTTGCTAACAAGAGGGCTTGGAGGGTTAGAACTAGAGAACAGAAAAGCAGAGGAATGGGCCGGCCAACTTCAGTGTTGGTCCTTATATCTTCTAGATTGCTTTGCATGCAAAGAAAGATCTCTCAGATTAATCTGCAAGAAAGAGTTCTTGAAGGATCTCTGTAAAATGTGGGGTGGATTAGCGAACCCAAAATCTCCTTCTGGAATCGGACTTCTTCGAACTCTGTGTCGTACAAACATAGGAAGAGAAACTATAGCAGAAGTCGAGGATGTCGTAGAGAATCTCTGTCTTGTCTCAAGATCTTCAGATGATCGAAAACACATGGCCATCGATAGTCTTATACAACTTCTCAAAGACCCAATCACAAGGTATAGAGTAATTGAAGCTGTAGCGCCAGTTCTTGCTGATTTAGTTGAACTCAAAGGAGTCCAAGAGATGGAGCGAGTTCTGTTACAGGATTATCATAAAATCAAGTACTTTGAAACAAAGTTGAAGAGTGAGAAAGCTGAGAAAGCTTTAAGAGAGATATGGGATTTGAAGGTGGAGAGAGTGAAGAGAGAGAGTCTAATGAGCGAGGAAGAAATCAGGGAGAGAGAGATATTGGCATATGTTCTGAAAAAAGAAGGGAATAAGAAGTTTAGGTCAGGGAAGGTTAAAGAAGCTGTGATGAAGTATTCAGAAGCCATTGATGTGTGTGGAGTGAAAGCGAGAAGAGAGAGGATAGTGCTTTACAGTAACAGAGCTCAGTGTTATTTGGTTCTTAGAGATGCAGATGCCGCCATTAGAGATACTACTCGAGCTCTGAGTCTGTCGTCACACGTCGCATGTCGTCACAGTAAGAGCTTGTGGAGAAGATCGCAAGCTTATGAAATGAAAGGCCTCGCTAAGGAAAGCATGATGGATTGTTTAGCGTTCATCAGGAGCCGCTTCAGGTCTCAGAAGAAGACGAAGACGAAGAAGAGGTTCAAAATCCCATACTACGCGGCTCGCATGCTTAACAAGCAGATGAATGCCACGTGGCCTTTTGCTTCAGCCAAGTCAAAGAGGAGCACGATCAAACACGTAGATGAACTTGACGAGTTCAGGGGCCATCAGTATCATCAGGTTGGTGTAAAAACCATGAGGGAGGCGACGACCAGGAAGAAGGAAGGTAGGAGAAGAAAGTCAGATAGGACAAGAACAAATGTTAGTCGACAAAGATTATGA 1854 0.4288 MESQIPENSNSKRIQKLLPSTPTCTNCSCFFCNMSETDPLVKRAKLSRCLKQMPLRDDKEHVLALSSIWRIAMTKPNDPEFPCLGIFRCMAKLIQKGLRNKGWLLNYQNIYIPYYAAHIIGSYTMNKAKFAEKAVKSNVVGPLIELLRGKISWVEQRVSLRALGHLARHESTFEAVAEHEEEIIQVAIDIASTCLCEVYNKFVGLEESQRLEYHRNLLTRGLGGLELENRKAEEWAGQLQCWSLYLLDCFACKERSLRLICKKEFLKDLCKMWGGLANPKSPSGIGLLRTLCRTNIGRETIAEVEDVVENLCLVSRSSDDRKHMAIDSLIQLLKDPITRYRVIEAVAPVLADLVELKGVQEMERVLLQDYHKIKYFETKLKSEKAEKALREIWDLKVERVKRESLMSEEEIREREILAYVLKKEGNKKFRSGKVKEAVMKYSEAIDVCGVKARRERIVLYSNRAQCYLVLRDADAAIRDTTRALSLSSHVACRHSKSLWRRSQAYEMKGLAKESMMDCLAFIRSRFRSQKKTKTKKRFKIPYYAARMLNKQMNATWPFASAKSKRSTIKHVDELDEFRGHQYHQVGVKTMREATTRKKEGRRRKSDRTRTNVSRQRL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1264 617 Gene3D Tetratricopeptide repeat domain 414 541 IPR011990 GO:0005515
Lele56g1264 617 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 21 600 - -
Lele56g1264 617 MobiDBLite consensus disorder prediction 590 617 - -
Lele56g1264 617 SMART tpr_5 418 451 IPR019734 GO:0005515
Lele56g1264 617 SMART tpr_5 457 490 IPR019734 GO:0005515
Lele56g1264 617 Gene3D - 19 413 IPR011989 -
Lele56g1264 617 SUPERFAMILY TPR-like 416 519 IPR011990 GO:0005515
Lele56g1264 617 SUPERFAMILY ARM repeat 104 354 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1264 Lele-ChrLele56 15953287 15955343 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele56g1264 56 15953287 15955343 Lele49g0325 49 1921308 1924029 CCT
Lele56g1264 56 15953287 15955343 Lele51g0338 51 1936339 1939062 CCT
Lele53g0170 53 1411892 1416402 Lele56g1264 56 15953287 15955343 hybridization
Lele54g0171 54 1462802 1464861 Lele56g1264 56 15953287 15955343 hybridization