Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1263 ATGATTATGGGAGACAATGTTGTGCCACCCAGTGCCTTGATGGATTCATCCATAGATTTTGATTACATGGACGAACTTTTCTCAGATGGATGCTGGTTGGAAACCGCTGCAGATGGATCTAATTTTTTGCTGGGAGGCCCTTCTGCGTCCAATCCCATCCTTGACTCATCATTTTCGTGGCCTGCCTTGGACACTAATGGGCATGTGAGCCTAGAACAAACGCAGAGTCCATTGATTGACGACTATAAGGAAACACAAACCAATACTCGATCGGATGACAAGGGCAAGGACATAATAGATGTTGGTGGGACTTGTAATCCGTCTGAAATTTGTTCAGTTAAAAGCTCAGAAGTTGTGAGGAGGTGGAGTATTGGACCTATGGCTAATCCGAGCCCTGAATGTTCTGTGTTGGAGAGACTAATTAAGGCACTTGTGTATATCAGAGATTTCAATAGAGACAAAAACATGCTTTTACAAATATGGGTGCCGTTTAATAGAGAGGGTGGAAGGATTCTAAGCACTTGTGATCTTCCCTTCTCGCTTGAAAGCAGCTGTTCAAATCTTGCTAAATATAGAGAAATCTCTGCCAAATATAATTTTTCAGCTGAGGGGCATTCTAGTGGGTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAAGGAGAAGGTTCCTGAGTGGACTCCTGATGTTCGATTTTTCAGGAGTGATGAGTACCCACGAGTTGACCATGCTTACGTGTATGATGTGCGTGGATCTTTAGCACTTCCAGTCTTTGAGAAATGTAGCAACATTTGCTTGGGTGTTATTGAGGTTGTAATGACAGCCCAGAAGATCAAGTATTTCCCTGAGCTTGAGAGTGTTTGCAAAGCACTTCAGGCTGTTGATCTTAGAAGCAAAAATATTTCAAGTATACAGAATGTGAAGGCATGCAACAATTCCTATGAAGCTGCACTGCCTGAGATCCAAGAGGTTTTGAGATCAGCATGTGAAATGCATAAATTACCTTTAGCTCAAACTTGGGTTCCATGTATCAAGCAAGGCAAAGAGGGGTGCCGGCACACAGATGATAATTATCTACACTGTGTATCTCCTGTTGAGCATGCTTGTTATGTTGGTGATCCTTGTGTCCGGGCTTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGCGTCACTGGTGAAGCTTTTATGACCAATCTGCCATGCTTCTCAACTGATGTAACTTCCTTTAGCAAGATAGATTATCCACTGTCTCATCATGCAAGGTTTTTTGGGCTGCGAGCTGCTGTTGCTATACGCCTACGAAGCATCCATAACAGTACAGATGACTTTGTACTTGAGTTCTTCTTGCCTGTAAATTGCACTGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATACAAAGGGTTTGCCATAGCCTGCGGGTGATAACAAATAAAGAATTGGAGGAGGAAACCAACTTATCAATTGATGAAGTGACAGTCCCTGCAGAGAGTAGATCTGCTAGGATGGAGTTCCAACAATGCAGGAAGGTTGCTTCACCTGGCACCAAAGAAAGGTCAAATGAAACTTTGACTAGACAGGTGTCCAACCTGAGTCAGCAAGAAGACTCTATTTTAAAAGGAAACCTTAACTATGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTACCAATTGCAGGTTTAAGTAAAATGGGAGACAAAAGACGGACCAAAGCAGAGAAAACTATCACCCTGCAAGTTCTTCGGCAATATTTTGCAGGAAGCCTAAAAGATGCTGCAAAGAATATTGGTGTTTGTACGACAACTTTGAAAAGAATCTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTCGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCCGTTCAAGGTGCCTCTAGTGCTTTTCAGATAGATTCTTTCTACTCAAAGTTTCCGGAGCTAGCGTCTCCAAATTTGCCAGGAAGCAGCTTGTTCTCAACTTCAAAGCAAAGTGATCTTCCAAATCCATCAAGCACAAGGCCTGATGCTAGCTTGCTGAGACCAGAAGCGCCCTCATCTTCATGCAATCAAAGTTCCAGTTCAAGCCATTCCTCTTCTAACATGTCAGAGTTACAGCTTCATGCCCAAAATGTTGCCGGTGGTAAAGTTACTAGGTTTAGAGAAGATTCTGCTGATGGGGTCATGAAGAGGATTCCAAGTGAAGTAGGGATAAAAACCTTATGTCAAGATACAGCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAACACCTTGTGAACATCCAAAAACTGAGTTGAAAAGCAGTCATAAAGCACATAAAAAAGAAGATACTCACAGAGTAAAAGTCACTTTCAGAGAGGAGAAAACCCGGTTTCGGATGCCAAAGAATTGGCGTTATGAAGATCTTTTGTGGGAAATTGCTTGGCGATTCAACATAGATGACATGTGCAAATACGATATCAAGTATCTGGACGATGACTCGGACTGGGTTTTGCTAACTTGTGATGCTGATTTGGAGGAGTGCATTGATGTTTTTCAACATTCTCAGAGCAGTACCATCAAACTTTGCCTTCTGGATAGTAAATCGTAG 2640 0.4273 MIMGDNVVPPSALMDSSIDFDYMDELFSDGCWLETAADGSNFLLGGPSASNPILDSSFSWPALDTNGHVSLEQTQSPLIDDYKETQTNTRSDDKGKDIIDVGGTCNPSEICSVKSSEVVRRWSIGPMANPSPECSVLERLIKALVYIRDFNRDKNMLLQIWVPFNREGGRILSTCDLPFSLESSCSNLAKYREISAKYNFSAEGHSSGLVPGLPGRVFKEKVPEWTPDVRFFRSDEYPRVDHAYVYDVRGSLALPVFEKCSNICLGVIEVVMTAQKIKYFPELESVCKALQAVDLRSKNISSIQNVKACNNSYEAALPEIQEVLRSACEMHKLPLAQTWVPCIKQGKEGCRHTDDNYLHCVSPVEHACYVGDPCVRAFHEACSEHHLLKGQGVTGEAFMTNLPCFSTDVTSFSKIDYPLSHHARFFGLRAAVAIRLRSIHNSTDDFVLEFFLPVNCTDSEEQKKMLTSLSMIIQRVCHSLRVITNKELEEETNLSIDEVTVPAESRSARMEFQQCRKVASPGTKERSNETLTRQVSNLSQQEDSILKGNLNYGWECSSFGEGGLPIAGLSKMGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLFSTSKQSDLPNPSSTRPDASLLRPEAPSSSCNQSSSSSHSSSNMSELQLHAQNVAGGKVTRFREDSADGVMKRIPSEVGIKTLCQDTAELLPTSQSQETPCEHPKTELKSSHKAHKKEDTHRVKVTFREEKTRFRMPKNWRYEDLLWEIAWRFNIDDMCKYDIKYLDDDSDWVLLTCDADLEECIDVFQHSQSSTIKLCLLDSKS 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1263 879 SMART PB1_new 794 877 IPR000270 GO:0005515
Lele56g1263 879 CDD PB1_NLP 795 874 IPR034891 -
Lele56g1263 879 Gene3D - 795 877 - -
Lele56g1263 879 PANTHER PROTEIN NLP8 101 874 IPR045012 GO:0003700
Lele56g1263 879 MobiDBLite consensus disorder prediction 699 719 - -
Lele56g1263 879 Pfam RWP-RK domain 583 631 IPR003035 -
Lele56g1263 879 MobiDBLite consensus disorder prediction 672 719 - -
Lele56g1263 879 MobiDBLite consensus disorder prediction 672 692 - -
Lele56g1263 879 Pfam PB1 domain 794 874 IPR000270 GO:0005515
Lele56g1263 879 ProSiteProfiles PB1 domain profile. 794 877 IPR000270 GO:0005515
Lele56g1263 879 MobiDBLite consensus disorder prediction 767 789 - -
Lele56g1263 879 SUPERFAMILY CAD & PB1 domains 785 877 - -
Lele56g1263 879 ProSiteProfiles RWP-RK domain profile. 570 651 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1263 Lele-ChrLele56 15940206 15943611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1263 18 874 NLP Transcription Factor Family AT1G20640 49.769 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele56g1263 PB1 3.4e-19 CL0072