Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1248 ATGACTCAATTCACACCAACGCTACCACCTTTGCACCAAATCACCCCCTTTTCGGACTCCATCGGAAATAACAACAACATTCAAGTTCCTAGGACGACGAATTCATGGCCGAAATTCCAACAATCGGAGGCACTAGGAAGCTTGGGTGATGCTAATTGCATGGAACAGTTGCTTATTCACTGTGCCGACGCCATTGAAGCTAATGACGTCACTCTCGCCCAACAAATACTATGGGTTCTCAACAACATCGCACCTCCCGACGGCGACTCCAATCAGCGTCTTGCCGCCACGTTCCTGCGTGCCCTCACCGCACGCGCAGCCAAATCTGGAAGCTCCAAAATGTTAGCCGCCGTCGCAAGCGCACATAACAACACCTGCAGTCTAGCCATACAAACCCACCGGTTCTCCGTCATCGAGCTTGCCAACTTCATCGACATCACCCCCTGGCATCGGTTCGGCTTCACGGCAGCTAACTCTGCCATTCTAGAAGCCACCGAAGGTTTCTCCGCCATCCACATCGTTGACCTAAGCTCAACACACTGCATGCAGATTCCCACCCTAATCGACGCCATCGCTTCCCGCCACGACGTCCCTCCTCTGATCAAGCTCACGGTAGTCGGTGCTTCTAGAAACATCCCACCCATGCTTGACCTTTCCTACGACGAACTCGGTTTAAAGCTGGTGAATTTCGCAAAGTCTAAAAACGTCACGATGGATTTCAGAGTGATTTCTTCAACTCACGCAGACGGGTTCGCTACTCTGATCCAATACCTTGGGTTGCACCACCGTCTCATGACGGAAGCTTTGGTAATAAACTGTCACATGATGCTTCATTGTATTCCAGATGAAACCCTATCTGCAGCTACTTCTCCTTCTCCTTCATCACTGAGATCACAGTTTCTCAAGGCTCTGCGGAGTTTGAACCCAACGCTTGTCGTTTTGGTGGAGGAGGACGCCGATTGGACATGGAGTGATTTGGTGTGCAGGCTGAGAGCTGCGTTTAACTTTATGTGGATACCGTACGACACAGTGGACACGTTTGTTCAACGAGGAAGCAAGCAAAGGCAGTGGTACGAAGCGGATATGTGTTGGAAGATAGAGAATGTGATAGCGCATGAAGGTGTTGAGAGGGTAGAGAGACTTGAGGGTAAGAGCAGATGGTGGCAGCGAATGAGAGATGCTGAGTTTCAGGGGATTAGCTTCAGCAACGACGCCGTTACGGAGGTGAAGGCCATACTGGACGAACATGCAGCTGCGTGGGGATTCAAGAAGGAAGACCAACATCTCCTGCTTACGTGGAAAGGACATAATGTCGTTTTTGCCTCCGCTTGGTTTCCGGCTTGA 1344 0.5074 MTQFTPTLPPLHQITPFSDSIGNNNNIQVPRTTNSWPKFQQSEALGSLGDANCMEQLLIHCADAIEANDVTLAQQILWVLNNIAPPDGDSNQRLAATFLRALTARAAKSGSSKMLAAVASAHNNTCSLAIQTHRFSVIELANFIDITPWHRFGFTAANSAILEATEGFSAIHIVDLSSTHCMQIPTLIDAIASRHDVPPLIKLTVVGASRNIPPMLDLSYDELGLKLVNFAKSKNVTMDFRVISSTHADGFATLIQYLGLHHRLMTEALVINCHMMLHCIPDETLSAATSPSPSSLRSQFLKALRSLNPTLVVLVEEDADWTWSDLVCRLRAAFNFMWIPYDTVDTFVQRGSKQRQWYEADMCWKIENVIAHEGVERVERLEGKSRWWQRMRDAEFQGISFSNDAVTEVKAILDEHAAAWGFKKEDQHLLLTWKGHNVVFASAWFPA 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1248 447 MobiDBLite consensus disorder prediction 1 22 - -
Lele56g1248 447 ProSiteProfiles GRAS family profile. 45 445 IPR005202 -
Lele56g1248 447 Pfam GRAS domain family 54 444 IPR005202 -
Lele56g1248 447 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 53 435 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1248 Lele-ChrLele56 15819447 15820790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1248 38 446 GRAS Transcription Factor Family AT3G49950 58.252 7.93e-174 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele56g1248 GRAS 5.8e-92 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0185 53 1541908 1543248 Lele56g1248 56 15819447 15820790 hybridization
Lele54g0188 54 1603034 1604215 Lele56g1248 56 15819447 15820790 hybridization