Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1247 ATGTCTTTCATTTCTAACGTCCCTCCCAACCAGAGACCTGCTCTGTTTCAGTCCTTGTTGTTTGAAGCGTGTGGGCGAACGGTGAGCCCTGTGAACGGAGCTGTCGGGCTTCTGTGGACGGGAAACTGGCATGTGTGCCAGGCGGCCGTGGAGACGGTGCTGCGCGGTGGCACGTTGAAGTCTATGCCGGAGCTTCTAGGCTCGGATGCTCCGGCTCCGGTTCCGGCTACGGATGAGGCATCCGAAGCGGGGGTTACGTGCAATGACATGCGGAGGATCCGAGATCCGAACTCGAATTTGCGGTATAATAACAAGGTCTCTCCCGGCGGCCAACTCGGACTGTCTGATGGCGCTGCCATTCTCCAGACGACCGATCTCGACCTCCGATTGACGCCGAGCTTAATCAGCAAAGTGCCTGCCTACGGCTGCGGACCAGAAGTCCGACGGCCGGGTTCACCGTCGATGAACTCGGAAGAATCCGTCACGACGGCGATTTGTTTGGAAAGCGGCATCAGAGATCACCACGCTAACGGCGGAGACCCGAAGCTTCTCAGCCTTTTCCTTTGA 567 0.5802 MSFISNVPPNQRPALFQSLLFEACGRTVSPVNGAVGLLWTGNWHVCQAAVETVLRGGTLKSMPELLGSDAPAPVPATDEASEAGVTCNDMRRIRDPNSNLRYNNKVSPGGQLGLSDGAAILQTTDLDLRLTPSLISKVPAYGCGPEVRRPGSPSMNSEESVTTAICLESGIRDHHANGGDPKLLSLFL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1247 188 Pfam Lateral organ boundaries (LOB) domain 2 53 IPR004883 -
Lele56g1247 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 169 - -
Lele56g1247 188 ProSiteProfiles LOB domain profile. 1 59 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1247 Lele-ChrLele56 15810293 15810995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1247 1 188 AS2 family AT4G37540 46.535 1.23e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele56g1247 LOB 1.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele56g1247 56 15810293 15810995 Lele49g0341 49 2000892 2001623 CCT
Lele56g1247 56 15810293 15810995 Lele50g0360 50 2060344 2061083 CCT
Lele56g1247 56 15810293 15810995 Lele51g0355 51 2019401 2020133 CCT
Lele56g1247 56 15810293 15810995 Lele52g0366 52 2142099 2142841 CCT
Lele53g0186 53 1555486 1556330 Lele56g1247 56 15810293 15810995 hybridization
Lele54g0190 54 1623032 1625330 Lele56g1247 56 15810293 15810995 hybridization