Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1246 ATGCTGTCATCACCCAATCCAGAACCCCCTATGGCCGTTACTTCACGCCATCTCACCCTAGCTGTACCCACTCATCATCTCTGTCTGACCTCCACCAAGGAGTTGAAGGACGAAAACAAGGAGGAAAGACAAGGATTGGTAGACAAGTTTAAGTGGGAAGCAAAAGGGAAAAGGACTCCAAAGAATAAGAGAAGCGAGAAATGGAACCAACTTTACAATAGAATCATCCCAAAGCAAGAAATTAGAAAATGTGAAATAAGAGAGGGAAGTAAGGATAGGAGGCATCAGAGACAGAGCATACGGTATTATTGGATGATGGAGACTTATTTACAAGAAAACTTTGAAGTCAAGTCCAAGAACTCATCTGAAGAGGTTCTTCAGAATTGGAGAAAACTTTGTGGGATTGTTAAGAACCCTAAAAGGAGGTTTCGTTTCACTGCCAATCTCTCCAAGCGAGGCGAAGCGGCTCAAATGCGTCGCACCAATCAGGAGAAATTGAGGGTTGCTGTTTTGGTTTCCAAAGCGGCATTTCAGTTTATCCAAGGGGTGCAACCAAGTGATTACACAGTACCTGAAAAAGTTAAAGAAGCAGGCTTTCAGATCTGTGCAGATGAATTGGAATCTATTGTTGAAAGACACGACATAAAGAAGCTAAAATTTCATGGTGGGGTTGATGGAATTTCAGAAAAGCTTTCAACTTCAACCGAGGATGGCATTAACAATGACTCCGACCTACTTATCAAGAGACAAGAAATCTACGGATTCAACAAATTCACCGAAAGTGAAGTCCGTAGTTTCTGGGTTTTTGTCTTCGAAGCCCTTCAAGACATGACGCTAATGATCCTAGGTGTGTGTGCTATTGTGTCTCTGCTAATTGGAATAGCAACAGAAGGATGGCCCAGAGGAGCTCACGATGGCCTAGGAATCGTCGTAAGTATCCTTCTGGTCGTGTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAGTTCAAGGATTTAGACAAGGAGAAAAAGAAGATTTCCATGCAGGTCACAAGAAACGGGTACAGAAAAAAAATGTCAATATATGAATTAGTTCCTGGCGACATTGTTCATCTTGCTATAGGAGATCAAGTCCCCACAGATGGACTCTTTGTTTCAGGATTCTCCGTGTTGATCGATGAATCAAGTTTAACAGGAGAAAGCGAACCAGTTATGGTGAATTCTCAGAACCCATTTCTTCTTTCTGGAACAAAGGTTCAAGATGGATCCTGCAAGATGTTAGTTACAACAGTAGGGATGAGAACTCAATGGGGTAAATTAATGGCGACATTGAGTGAAGGTGGAGATGATGAAACACCATTGCAGGTGAAACTTAATGGAGTTGCCACTATCATAGGGAAGATAGGCTTATTCTTCGCTGTTATTACCTTTTTCATTTTGATGAAGGGACTTATGTCACGTAAACTACAAGAAGGAAGATTTTGGAGTGTGTCTGGGGATGACGCCATGGAGATGTTGGAATTCTTCGCTGTTGCAGTTACAATCGTTGTCGTTGCTGTCCCTGAAGGGTTACCATTAGCTGTGACACTGAGCCTTGCGTTTGCTATGAAGAAAATGATGAACGACAAAGCCCTAGTTCGACATTTAGCAGCCTGCGAAACCATGGGTTCAGCAACAAGTATTTGCAGTGACAAGACAGGCACGTTAACGACCAATCGCATGACTGTCGTCAAAACGTGCGTTTGCATGAACACCAAGGAAGTGACCCATGATAACATAAACAACAACGAGTTACCAGATTTTGCCATGAAAATGTTACTACAGTCGATATTTAATAATACTGGAGGAGAAATTGTAGCTAAAAGAAAACGCAGAAAGAAACGTGAGATTCTAGGGACGCCTACAGAAGCTGCAATATTGGAGTATGGTTTATCACTAGGAGGGCATTTTCAGAAAGAGAGAAAAGCGTGTAAGATTGTGAAAGTTGAGCCATTTAACTCAGAAAAGAAAAGGATGGGTGTAGTTGTGGAGGTGCCTGAAGGAAAATTTCGAGCTCATTGTAAAGGTGCTTCTGAGATCGTTTTGGCTGCTTGTGACAAAGTGATTAATTCAAACGGAGATGTTGTGCAACTTGATGCAGAGAAAAGTAATTATCTTAAAGAAATAATTCACTCATTTGCTTGTGAGGCACTTAGAACTCTATGCCTTGCTTATGTGGAATTGGAAAATGGGTTCTCTGCTGAAGATCCTATTCCTACTTCTGGATATATTTGTATCGGAATTGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCTGTTGCAACCTGTCGTAAAGCAGGTATTACAGTTAGAATGGTTACAGGTGATAATATTAATACTGCTAAGGCTATAGCCAGAGAATGTGGGATTTTAACAGACGATGGTATAGCCATAGAAGGCCCTGATTTCAGAGAGAAGACTCAGGAGGAAATGTTTGAACTGATTCCTAAAATTCAGGTTATGGCTAGATCCTCACCATTAGATAAGCATACCTTAGTGAAACAATTGCGTACTACGTTTGGAGAAGTTGTAGCTGTAACTGGTGATGGGACAAATGACGCACCTGCCCTTCATGAGGCAGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCTAAAGAAAGCGCTGATGTCATAATTCTGGATGATAATTTCTCTACTATAGTGAAAGTGGCAGAATGGGGACGTTCAGTTTACATAAACATTCAAAAATTTGTACAGTTTCAGCTGACAGTTAATGTGGTTGCCTTACTTGTGAACTTCAGTTCAGCATGCACAACAGGAAGTGCGCCTCTTACGGCAGTTCAATTATTGTGGGTAAACATGATAATGGACACACTTGGAGCACTTGCGCTAGCAACTGAACCGCCAAACGATGAACTAATGAAGCGTTCACCAGTGGGAAGGCAGGGAAGTTTCATCAGCAATGTCATGTGGAGGAATATATTAGGTCAATCTCTGTATCAAGTCCTGGTGATATGGATTCTTCAGGCCAAAGGGAAATGGATCTTTGGAATGAAGGGTCCAGATTCTGATATGTTGTTAAACACACTTATTTTCAACTCATTTGTCTTCTGCCAGGTTTTCAACGAGATAAGCTCACGTGAGATGGAGGAAATAGATGTATTTAAAGGCATATTGGATAATCATGTTTTCGTGGCTGTCATAAGTGTCACTGTTTTGTTTCAAATCATAATAGTTGAGCATTTAGGAACCTACGCTAACACCACACCCCTCGCTCCCATTTACTGGTTGTTTAGCGTTTTCATTGGATATTTTGGAATGCCCATTGCAGCTCACTTAAAGAAGATCCCTGTCTGA 3360 0.4146 MLSSPNPEPPMAVTSRHLTLAVPTHHLCLTSTKELKDENKEERQGLVDKFKWEAKGKRTPKNKRSEKWNQLYNRIIPKQEIRKCEIREGSKDRRHQRQSIRYYWMMETYLQENFEVKSKNSSEEVLQNWRKLCGIVKNPKRRFRFTANLSKRGEAAQMRRTNQEKLRVAVLVSKAAFQFIQGVQPSDYTVPEKVKEAGFQICADELESIVERHDIKKLKFHGGVDGISEKLSTSTEDGINNDSDLLIKRQEIYGFNKFTESEVRSFWVFVFEALQDMTLMILGVCAIVSLLIGIATEGWPRGAHDGLGIVVSILLVVFVTATSDYRQSLQFKDLDKEKKKISMQVTRNGYRKKMSIYELVPGDIVHLAIGDQVPTDGLFVSGFSVLIDESSLTGESEPVMVNSQNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFFILMKGLMSRKLQEGRFWSVSGDDAMEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNRMTVVKTCVCMNTKEVTHDNINNNELPDFAMKMLLQSIFNNTGGEIVAKRKRRKKREILGTPTEAAILEYGLSLGGHFQKERKACKIVKVEPFNSEKKRMGVVVEVPEGKFRAHCKGASEIVLAACDKVINSNGDVVQLDAEKSNYLKEIIHSFACEALRTLCLAYVELENGFSAEDPIPTSGYICIGIVGIKDPVRPGVKESVATCRKAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEEMFELIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVKVAEWGRSVYINIQKFVQFQLTVNVVALLVNFSSACTTGSAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRSPVGRQGSFISNVMWRNILGQSLYQVLVIWILQAKGKWIFGMKGPDSDMLLNTLIFNSFVFCQVFNEISSREMEEIDVFKGILDNHVFVAVISVTVLFQIIIVEHLGTYANTTPLAPIYWLFSVFIGYFGMPIAAHLKKIPV 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1246 1119 FunFam Calcium-transporting ATPase 750 903 - -
Lele56g1246 1119 PRINTS P-type cation-transporting ATPase superfamily signature 557 571 - -
Lele56g1246 1119 PRINTS P-type cation-transporting ATPase superfamily signature 882 894 - -
Lele56g1246 1119 PRINTS P-type cation-transporting ATPase superfamily signature 777 787 - -
Lele56g1246 1119 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Lele56g1246 1119 PRINTS P-type cation-transporting ATPase superfamily signature 755 766 - -
Lele56g1246 1119 PRINTS P-type cation-transporting ATPase superfamily signature 858 877 - -
Lele56g1246 1119 PRINTS H+-transporting ATPase (proton pump) signature 858 874 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele56g1246 1119 PRINTS H+-transporting ATPase (proton pump) signature 714 732 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele56g1246 1119 PRINTS H+-transporting ATPase (proton pump) signature 890 915 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele56g1246 1119 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 650 803 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele56g1246 1119 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 497 579 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele56g1246 1119 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 828 938 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele56g1246 1119 Pfam Cation transporter/ATPase, N-terminus 221 289 IPR004014 -
Lele56g1246 1119 Gene3D - 554 903 IPR023214 -
Lele56g1246 1119 ProSitePatterns E1-E2 ATPases phosphorylation site. 559 565 IPR018303 -
Lele56g1246 1119 Gene3D - 272 1105 - -
Lele56g1246 1119 PANTHER CATION TRANSPORTING ATPASE 163 1118 - -
Lele56g1246 1119 SUPERFAMILY HAD-like 556 963 IPR036412 -
Lele56g1246 1119 Gene3D - 248 440 - -
Lele56g1246 1119 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 210 1119 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lele56g1246 1119 FunFam Calcium-transporting ATPase 567 762 - -
Lele56g1246 1119 Pfam Cation transporting ATPase, C-terminus 943 1116 IPR006068 -
Lele56g1246 1119 CDD P-type_ATPase_Ca_PMCA-like 248 991 - -
Lele56g1246 1119 Pfam E1-E2 ATPase 340 535 - -
Lele56g1246 1119 Pfam Ca2+-ATPase N terminal autoinhibitory domain 110 153 IPR024750 GO:0005516
Lele56g1246 1119 FunFam Calcium-transporting ATPase 320 440 - -
Lele56g1246 1119 Gene3D - 121 181 - -
Lele56g1246 1119 SUPERFAMILY Calcium ATPase, transmembrane domain M 221 1118 IPR023298 -
Lele56g1246 1119 FunFam Calcium-transporting ATPase 121 181 - -
Lele56g1246 1119 Gene3D - 567 762 IPR023299 GO:0000166
Lele56g1246 1119 Pfam Cation transport ATPase (P-type) 616 696 - -
Lele56g1246 1119 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 563 767 IPR023299 GO:0000166
Lele56g1246 1119 SMART Cation_ATPase_N_a_2 220 294 IPR004014 -
Lele56g1246 1119 SUPERFAMILY Calcium ATPase, transduction domain A 343 437 IPR008250 -
Lele56g1246 1119 FunFam Calcium-transporting ATPase 875 1119 - -
Lele56g1246 1119 SFLD p-type atpase 539 910 IPR044492 -
Lele56g1246 1119 SFLD C1.7: P-type atpase like 539 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1246 Lele-ChrLele56 15792861 15800986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1246 106 1119 Primary Pumps ATPases AT4G37640 79.724 0.0 1674