Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1241 ATGGAAGAAGGGTACGGTAGGATAGAGGTAGTGAGAGAGTTCGACCCAGATAAAGACAGAGAGAGAGTAGAAGCAGTAGAAAGAATATGTGAAGTTGGACCCAGTGGGAAGCTTTCCCTCTTCACCGACCTCCTCGGTGACCCAATTTGCAGGGTCCGCCACTCCCCTGCTTTCCGCATGCTGGTGGCTGAGGTAGGCGAAGAGATTGTTGGAATGATAAGGGGTTGCATCAAAACCGTCACATGCGGAAAGAAGCTCTCCAGAAATGGAAACTTCACTGAACCCCTCCCTGTATACACCAAGCTCGCTTATATCTTAGGTCTTCGCGTCTCTCCTTCTTACCGGAGAATGGGAATAGGTTTGAAGCTGGTGAAGACAATGGAGGAATGGTTCAGAGATAATGGAGCTGAATACTCATACATGGCGACAGAAAAGGACAATTTGGCGTCCGTTATGCTCTTCACCGACAAATGCGGATACTCCAAGTTCCGTACACCGTCGATCCTCGTCAGCCCCGTTTTCGCTCATCGGATTAATCTTTCTCAGAAGATCACTATAATCAGACTCGATCCCTCCGACGCCGAGAAGCTCTATCGCCGCCGCTTCGCCACCACCGAGTTCTTCCCGCGCGACATTCGCTCCATCATCAACAACAAACTAAGCCTTGGCACCTTCCTCGCCGTCCCGCGCGGGTCATTTAGTCCAGACACGTGGCCCGGGTCGGACTTATTCCTCTCGAACCCTCCCGAGTCATGGGCGGTTATCAGCGTCTGGAACTGTAAGGACGTGTTCACGCTCGAGGTCCGAGGCGCGTCGCGCGTGAAGCGTACACTGGCCAAAACGACGCGGATTGTGGACCGGGCGTTGCCGTTTCTGCAGCTGCCGTCGATCCCGAATTTCTTCAGGCCGTTTGGGTTTCACTTCATGTATGGGTTAGGAGGGGAAGGACCAGAGGCGGCGAAGATGGTGAAGGCGTTGTGTGGGCACGCGCACAACCTCGCGAAGGAGCGTGGGTGTGGTGTGGTCGTGACGGAGGTTTCGAGCTGCGAACCGTTGAAGTTAGGGATACCACACTGGAAGATTCTATCATGCGCCGAGGATTTATGGTGCATCAAGAGGCTCGGGGAAGACTATAGTGACGGCTCTGTCGGTGACTGGACAAAATCTCCACCTGGATTGTCCATTTTTGTTGACCCTAGAGAATTCTAA 1209 0.5318 MEEGYGRIEVVREFDPDKDRERVEAVERICEVGPSGKLSLFTDLLGDPICRVRHSPAFRMLVAEVGEEIVGMIRGCIKTVTCGKKLSRNGNFTEPLPVYTKLAYILGLRVSPSYRRMGIGLKLVKTMEEWFRDNGAEYSYMATEKDNLASVMLFTDKCGYSKFRTPSILVSPVFAHRINLSQKITIIRLDPSDAEKLYRRRFATTEFFPRDIRSIINNKLSLGTFLAVPRGSFSPDTWPGSDLFLSNPPESWAVISVWNCKDVFTLEVRGASRVKRTLAKTTRIVDRALPFLQLPSIPNFFRPFGFHFMYGLGGEGPEAAKMVKALCGHAHNLAKERGCGVVVTEVSSCEPLKLGIPHWKILSCAEDLWCIKRLGEDYSDGSVGDWTKSPPGLSIFVDPREF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1241 402 FunFam Probable N-acetyltransferase HLS1-like 18 167 - -
Lele56g1241 402 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 9 181 IPR000182 GO:0016747
Lele56g1241 402 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 49 162 IPR016181 -
Lele56g1241 402 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 10 402 - -
Lele56g1241 402 Pfam Acetyltransferase (GNAT) family 56 160 IPR000182 GO:0016747
Lele56g1241 402 CDD NAT_SF 60 138 - -
Lele56g1241 402 Gene3D - 44 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1241 Lele-ChrLele56 15751797 15753274 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele56g1241 Acetyltransf_1 2.1e-18 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0349 49 2061074 2063968 Lele56g1241 56 15751797 15753274 CCT
Lele53g0193 53 1606072 1607547 Lele56g1241 56 15751797 15753274 hybridization
Lele54g0196 54 1691667 1693077 Lele56g1241 56 15751797 15753274 hybridization