Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1234 ATGGATACCTTGTTTCGGCTTGTCAGTTTTCAGTCTCAACCTTCTGATCCTCAATCCCTCAACAATTCCTCTAGCAGCTCTAGATCCTCAAGACAAAACAACAACAAGAAGAATTACAACTACAGCTACGACCACCACCAGCAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACTTGTCCTCTTCTTCTAAGCACTACTATCCTTATCATCATCATCCCCACCCGTCTTCTTCCACCACCACCGCCACGCCCACCACTGCTACTACTTTCACTACCACCACTCCCACCACTTCTGATTTCTCCTTCTCTCTCTCCCCCACCACTCCTGACCTTCACAACTTTGAATTCTCCGGCCGATGGGCTCACGATCTCCTCCTTGAGACAGCCCGTGCCGTTGCCGACAAGAACAGCGCTCGTGTCCAGCAATTGATTTGGATGCTCAACGAACTTGCTAGTCCCTATGGTGATACGGATCAGAAGCTCGCGGCTTACTTCCTTCAGTCTCTGTTTAGTCGGGTTACTGACGCCGGGGACCGGACCTACCGTACTTTGGCCACCGCGTCGGAGAAAACATGCTCTTTTGAGTCGACAAGGAAGATGGTTTTGAAGTTCCAAGAGGTCAGCCCTTGGACTACTTTCGGCCACGTCGCTTCCAATGGCGCCATCTTGGAAGCCTTAGAAGGTGAGCCGAAGTTGCACATAGTTGATATTAGCGATACACATTGCACCCAGTGGCCCACACTTCTTGAAGCCTTGGCCACTCGCAGCGATGACACCCCTCACCTTCGGTTAACCACGGTGGTTAGCCGCCGAGCCGGTGGATCCATCGCGGCTGTTCAGAAAGTCATGAAGGAGATAGGGACTAGAATGGAGAAATTCGCTCGGCTAATGGGTGTTCCCTTTAAATTCAACATCATTCATCACGCGGGTGATCTCTCAGACTTTAATTTCTCTGAATTAGATATTAAAGACGACGAGGCTCTCGCCATTAACTGTGTGAACAGGTTGCATTCCATCACGGCCTTTGGTAATAACCGTGACATGTTGATATCCTCGTTTCGGAGATTACAACCTAGGATAGTCACAGTGGTGGAAGAGGAAGCAGATCTTGATGTTGGATTTCATGGGTTTGAATTTGTACGTGGTTTCCAAGAATGCTTGAGGTGGTTTAGGGTTTACTTCGAGGCACTGGAGGAGAGCTTTCCCCGAGCAAGCAACGAGCGTTTGATGCTCGAGAGAGCGGCAGGACGAGCCATCGTTGACTTGGTGGCTTGTGATCCGTCGCAGTCAGTAGAACGGAGGGAGACGGCGGTGAGATGGTCGCAGCGGCTGCATGGTAGTGGGTTCAATGCAGTCCCGTTCAGCGATGAGGTATCCGACGACGTGAGAGCGCTGTTGAGGAGGTACAAGGAAGGTTGGTCAATAACACATTGCTCCGACGCTGGAATATTCTTGTCGTGGAAGGAACAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1515 0.5063 MDTLFRLVSFQSQPSDPQSLNNSSSSSRSSRQNNNKKNYNYSYDHHQQEDEECFNFFMDEEDLSSSSKHYYPYHHHPHPSSSTTTATPTTATTFTTTTPTTSDFSFSLSPTTPDLHNFEFSGRWAHDLLLETARAVADKNSARVQQLIWMLNELASPYGDTDQKLAAYFLQSLFSRVTDAGDRTYRTLATASEKTCSFESTRKMVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIVDISDTHCTQWPTLLEALATRSDDTPHLRLTTVVSRRAGGSIAAVQKVMKEIGTRMEKFARLMGVPFKFNIIHHAGDLSDFNFSELDIKDDEALAINCVNRLHSITAFGNNRDMLISSFRRLQPRIVTVVEEEADLDVGFHGFEFVRGFQECLRWFRVYFEALEESFPRASNERLMLERAAGRAIVDLVACDPSQSVERRETAVRWSQRLHGSGFNAVPFSDEVSDDVRALLRRYKEGWSITHCSDAGIFLSWKEQPVVWASAWRP 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1234 504 Pfam GRAS domain family 127 503 IPR005202 -
Lele56g1234 504 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 88 493 IPR005202 -
Lele56g1234 504 MobiDBLite consensus disorder prediction 69 89 - -
Lele56g1234 504 MobiDBLite consensus disorder prediction 9 41 - -
Lele56g1234 504 ProSiteProfiles GRAS family profile. 116 503 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1234 Lele-ChrLele56 15683665 15685179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1234 1 504 GRAS Transcription Factor Family AT4G37650 62.970 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele56g1234 GRAS 6.1e-107 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0375 51 2155181 2158460 Lele56g1234 56 15683665 15685179 CCT
Lele52g0390 52 2282890 2288594 Lele56g1234 56 15683665 15685179 CCT
Lele53g0200 53 1674113 1675642 Lele56g1234 56 15683665 15685179 hybridization
Lele54g0204 54 1756688 1758223 Lele56g1234 56 15683665 15685179 hybridization