LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele56g1233	ATGCGGCAAATGACTGCCAATCATGATGAAATTGATGGCGAAGATAAAGAGGAAGAGAGGAAGAGGATGAGGAACAAACACAGGAAGCCAACAAATTTATGTGGCAACGCAGAGAGCAGATTTTCTGCGTCTGCTGTGGTGTGGAGCTTGGTGGGATGCATTGTTTTGATTCATTTCTATTCCAATATTCATCAAAGAGATAGGGAAGGTGGAGAGGTCCGATTGCGAATAAGCCATCATCCCCAACTCCGTGAGCTTCAACAAGTGGAGGAGGAGGAGAACATCCGAATTCCCCCACCCAAGGGAAAGAGGTCCCCTAGGGCCACAAAACGTAGACCTAAGCGCACAACCACAGTGATTGATGAATTCCTTGATGAAAATTCACAACTGAGACACCTATTTTTTCCTGGTCACAAAAGAGCTATAGATACAGCAAATGCTGGTAATGAAAGTTATTATTACTACCCTGGCAGAATCTGGTTGGATACAGATGGAAATCCTATTCAAGCCCATGGAGGTGGCATTCTGTATGATAAAAAATCGAGGACATACTATTGGTATGGTGAATATAAAGATGGGCCCACGTACCGTGCTCACAAGAAAGGAGCTGCTCGTGTGGACGTTATAGGAGTTGGTTGTTATACTTCCCAGGATTTGTGGACTTGGAAAAATGAGGGAATTGTATTGGCGGCAGTGGAAACTAATGAAACTCATGATCTGCACAAGTCCAATGTGCTTGAGAGGCCAAAAGTGATTTACAATGACAAAACTGGAAAATATGTGATGTGGATGCACATAGACGATGCCAATTATACAAAAGCTGGGATTGGGGTAGCAATCAGTGATACTCCTGATGGTCCTTTTGATTATCTTGGTAGCCAAAGGCCACATGGATATGAAAGCAGGGATATGACAGTTTTCAAGGATGATGATGGTGTGGCATATCTAATATACTCTTCAGAGGAAAATAGTGTACTGCACGTTGGACCCTTAACTGAAGATTATCTTAATGTGACTTCTGTAATGAGAAGGATCCTAGTGGGACAGCACAGAGAAGCGCCTGCTCTATTCAAGCATCAAGGGACATACTATATGATCACATCCGGCTGCACCGGGTGGGCCCCAAATGAGGCACTGGCTCATGCATCTGATTCGATATTGGGGCCATGGGAAACAATGGGAAATCCATGCGTTGGAGGGAACAAAGTATTTCGACTGACAACTTTCTTTGCTCAGAGCACTTTTGTGCTCCCTATACCTGGATACCCTGGTTCATTTATTTTTATGGCAGATCGGTGGAATCCCGCTCACCTAAGGGACTCAAGATATGTATGGTTACCTTTGATAGTGGCAGGACCTGCTGATCAACCTCTGGAGTACAATTTTGAGTTCCCATTATGGTCAAGAGTTTCTGTCTTTTGGCACAGAAAATGGAGACTGCCTCTGGGATGGCGGGGATTCATATAA	1467	0.4424	MRQMTANHDEIDGEDKEEERKRMRNKHRKPTNLCGNAESRFSASAVVWSLVGCIVLIHFYSNIHQRDREGGEVRLRISHHPQLRELQQVEEEENIRIPPPKGKRSPRATKRRPKRTTTVIDEFLDENSQLRHLFFPGHKRAIDTANAGNESYYYYPGRIWLDTDGNPIQAHGGGILYDKKSRTYYWYGEYKDGPTYRAHKKGAARVDVIGVGCYTSQDLWTWKNEGIVLAAVETNETHDLHKSNVLERPKVIYNDKTGKYVMWMHIDDANYTKAGIGVAISDTPDGPFDYLGSQRPHGYESRDMTVFKDDDGVAYLIYSSEENSVLHVGPLTEDYLNVTSVMRRILVGQHREAPALFKHQGTYYMITSGCTGWAPNEALAHASDSILGPWETMGNPCVGGNKVFRLTTFFAQSTFVLPIPGYPGSFIFMADRWNPAHLRDSRYVWLPLIVAGPADQPLEYNFEFPLWSRVSVFWHRKWRLPLGWRGFI	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele56g1233	488	MobiDBLite	consensus disorder prediction	1	24	-	-
	Lele56g1233	488	CDD	GH43_CtGH43-like	168	448	-	-
	Lele56g1233	488	MobiDBLite	consensus disorder prediction	86	100	-	-
	Lele56g1233	488	Gene3D	Glycosyl hydrolase domain; family 43	136	464	IPR023296	-
	Lele56g1233	488	MobiDBLite	consensus disorder prediction	86	115	-	-
	Lele56g1233	488	SUPERFAMILY	Arabinanase/levansucrase/invertase	166	449	IPR023296	-
	Lele56g1233	488	PANTHER	GLYCOSYL HYDROLASE 43 FAMILY MEMBER	45	481	-	-
	Lele56g1233	488	Pfam	Glycosyl hydrolases family 43	209	393	IPR006710	GO:0004553\|GO:0005975
	Lele56g1233	488	MobiDBLite	consensus disorder prediction	1	31	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele56g1233	Lele-ChrLele56	15677374	15680267	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele56g1233	34	481	Glycoside Hydrolase	AT5G67540	70.282	0.0	683

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0361	49	2126847	2133024	Lele56g1233	56	15677374	15680267	CCT
	Lele53g0201	53	1679129	1681749	Lele56g1233	56	15677374	15680267	hybridization
	Lele54g0205	54	1761476	1764115	Lele56g1233	56	15677374	15680267	hybridization