Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1225 ATGAAGCAACCGTTCTCTTTGGAACGGTCCAACCAAGTTTTGGCTTCTCTCTCAACGAAGTTTCATGGGAAACTCTACAGGGCCCCACTTGTGGCTATTCTCTCCATGTTTTGTTCTCCAACTGATACACATCAATCCTCAACCGCTATGTCCGTCTCCCCGAACCACCTAGTAACTCTTGACTTGTTCTGCAATGAAGCAGCTAGTGACGTGGTTTCATCGGATTCCGATATTACTAACTGTGAATCATTGGCGGCTTCCAGTGTCTCATCATCATCATGGGATTCCGAAGATGAAAGCTGTTTCTTGACCTTACTTTACTCTGAACTCGATCAAATACACGAAAGACAACAGTCATTGTCACTGCTTCACGAAAAACCATGGCTCATAACTGCTCGAGAAGATGCCATAATTTGGATGCTAAAGGTACAAGGTTACTACAGTTTTACACCTGAAACGGCATGTCTGTCTGTGAATTATCTTGATCGTTTCCTTTCGTCACACTCATTACCGCAAGATGAAGCATGGCCGTTGCAGTTAGTTGCAGTGGCTTGTTTGTCTGTGGCAGCAAAAATGGAAGAAACAAGGGTTCCACTTTTAGTAGACTTACAAATGATAGAGCCTAGGTTCTTGTTTAAGCCTAAAACAGTTCAAAGAATGGAGCTTTTGGTTATGGCGGCTCTCAGGTGGCGATTGCGTGCTGTTACTCCTTTTGATTTTGTTAATCTCTTCATTGCTAAGGCTAATAAGCTATCATGCTCTGTCCACAATATGTCTCGCGTCTCAGATATTATAATCAGAACATGTTTAGCAGTGATCGATTTCTTAGAGTATCCTCCATCTGCAATAGCTGCTGCTGCTCTGTTTTGGACAATCAATCGATATGTTGATGAACAGAATCTAAGCTTCTTCCACGAAAATATAAACAAAGAGATGGTGCAGAAATGTTACAACCTCATGAAGCAGAGGATTTTCAGATCAGAACATTTTGCAACAACGAATTCAGATTCATTGCCTCTAAGTCCTACTTGTGTGCTTGGTCTTGCAGCTATGCAAGAAAACAGCAAGGATCAAAGCCGGTGCTGCTTTTTTTACAAGATTCAACTTGGTCAATTTAATCAAACCTATCCCAACACGATTCGTACTGAAAATGGACTAGTTTTTGAAGCAAGAGGCAGAGACAAAGCAACGTGGAGGGATAGCATAAAGAGGCTCCACTGGATTGGAACAAAGGGTTTAAGCTTAATACTGAAGCATAGGAGATTGTCTCGCCCAAGAGGTGCTTGTTATGATTCATATGATAAACGCAAAGCAAAGGACATGTTAGAGGAAGCTTCCCTTTGCAATGCACCTAGAATGGCTGGCCATCATGCAAAGCATGACGATATGGAAGAGTCTTCTGGATTAATGATGGAGAACCATCGAACATGTTCTGCTAGGGCGGGTAAGGGAAAAAGATTGTGGAAGAAGGTGAAGTACCAGCTAGTTGAGTACCACTCCTTGCCGGGTTACTTGAGAGACAACGAATACATTCTGGCCCATTACCGATCAGAATGGCCCTTGAAGCAGGCGTTGCTCAGCATTTTTAGCGTTCATAATGAAACACTGAATGTTTGGACGCATTTGATTGGATTCTTCCTATTTCTGGCATTGACCATATATACTGCCATGAAAGTTCCAAAGGTTGTTGATCTTCATTCTCTTCAGCATTTTCATGGCATTGTGAAGAAGGCTGATCTGCACAAATTGCAAGAAGAACTTCTGAAGTGCCTCCCCTCATTGCCCTCAATGGATATGCTTCCATCACTTTCAAGTTGGCATGTAAAGGAACTTCTGTATAACTGTTTGCCAGAACGATTTTCCAGCAGCAATCATACTGATGGTTGTGTTCTGCATAGTGTGAAGGATGACTTAGCCAACATAATTGCGCCATTGATTATGAGACCAATTACAAGGTGGCCATTTTTTGCATTTTTAGGAGGTGCCATGTTTTGCTTGCTAGCTAGCAGCGTATGCCACCTCCTCTCTTGTCACTCAGAGCGCATGGCATACATCATGCTCAGGCTTGACTATGCCGGAATTGCCGCTCTGATATCCACCTCCTTCTACCCTCCAGTATATTACTCTTTTATGTGCTATCCCTTCTTCTGCAACCTCTACTTGGTATCTATAACATTACTGGGAATTGCCACCATCTTGTTTTCTCTCCTTCCGGTCTTCCAAAACCCAGAATTCCGTGCTATCCGAGCATCCCTCTTCTTCGGCATGGGTCTGTCTGGTGTAGCGCCGATTCTCCACAAGCTTTATTTGTTCTGGGGTGAACCTGAGGTGTTCTACACAACAGGGTATGAGATTTTGATGGGCGTTCTCTATGGGATTGGAGCGCTAGTTTATGCTACTAGGATCCCAGAACGTTGGAGACCTGGGAAATTTGACATAGCTGGGCATAGCCACCAATTATTTCATATATTAGTGGTAGCGGGCGCATACACTCACTATCATGCAGGATTGGTTTATCTCAGGTGGCGTGACCTTCGAGGTTGTTGA 2547 0.4342 MKQPFSLERSNQVLASLSTKFHGKLYRAPLVAILSMFCSPTDTHQSSTAMSVSPNHLVTLDLFCNEAASDVVSSDSDITNCESLAASSVSSSSWDSEDESCFLTLLYSELDQIHERQQSLSLLHEKPWLITAREDAIIWMLKVQGYYSFTPETACLSVNYLDRFLSSHSLPQDEAWPLQLVAVACLSVAAKMEETRVPLLVDLQMIEPRFLFKPKTVQRMELLVMAALRWRLRAVTPFDFVNLFIAKANKLSCSVHNMSRVSDIIIRTCLAVIDFLEYPPSAIAAAALFWTINRYVDEQNLSFFHENINKEMVQKCYNLMKQRIFRSEHFATTNSDSLPLSPTCVLGLAAMQENSKDQSRCCFFYKIQLGQFNQTYPNTIRTENGLVFEARGRDKATWRDSIKRLHWIGTKGLSLILKHRRLSRPRGACYDSYDKRKAKDMLEEASLCNAPRMAGHHAKHDDMEESSGLMMENHRTCSARAGKGKRLWKKVKYQLVEYHSLPGYLRDNEYILAHYRSEWPLKQALLSIFSVHNETLNVWTHLIGFFLFLALTIYTAMKVPKVVDLHSLQHFHGIVKKADLHKLQEELLKCLPSLPSMDMLPSLSSWHVKELLYNCLPERFSSSNHTDGCVLHSVKDDLANIIAPLIMRPITRWPFFAFLGGAMFCLLASSVCHLLSCHSERMAYIMLRLDYAGIAALISTSFYPPVYYSFMCYPFFCNLYLVSITLLGIATILFSLLPVFQNPEFRAIRASLFFGMGLSGVAPILHKLYLFWGEPEVFYTTGYEILMGVLYGIGALVYATRIPERWRPGKFDIAGHSHQLFHILVVAGAYTHYHAGLVYLRWRDLRGC 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1225 848 PANTHER ADIPOR/PROGESTIN RECEPTOR-RELATED 477 843 IPR004254 GO:0016020
Lele56g1225 848 Pfam Cyclin, C-terminal domain 235 324 IPR004367 -
Lele56g1225 848 CDD CYCLIN 236 320 IPR013763 -
Lele56g1225 848 Gene3D - 234 317 - -
Lele56g1225 848 SMART Cyclin_C_2 235 343 IPR004367 -
Lele56g1225 848 CDD CYCLIN 133 225 IPR013763 -
Lele56g1225 848 FunFam D6-type cyclin 116 233 - -
Lele56g1225 848 Pfam Haemolysin-III related 529 833 IPR004254 GO:0016020
Lele56g1225 848 ProSitePatterns Cyclins signature. 133 164 IPR006671 -
Lele56g1225 848 SMART cyclin_7 138 226 IPR013763 -
Lele56g1225 848 SUPERFAMILY Cyclin-like 101 232 IPR036915 -
Lele56g1225 848 Pfam Cyclin, N-terminal domain 130 232 IPR006671 -
Lele56g1225 848 SUPERFAMILY Cyclin-like 217 326 IPR036915 -
Lele56g1225 848 Gene3D - 131 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1225 Lele-ChrLele56 15630504 15639887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1225 50 332 Core Cell Cycle Gene Families AT1G70210 39.590 3.64e-53 186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0209 53 1719259 1720567 Lele56g1225 56 15630504 15639887 hybridization
Lele54g0213 54 1800386 1801798 Lele56g1225 56 15630504 15639887 hybridization