Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1216 ATGGGAACTTCAACTGTAAAATCCTTCTTTTTTATTTGCTTGTTGCTAATTCTGGGGTTTCCAGAATCAGTAAAAAGCCAGAGTAGCTGTCCAGAACCTGAAACAAGATGTGGAAACCATCATGTTCGATTTCCTTTCCGAATAATAGGACGCCAACCAGAAGAGTGTGGTTATCCTGGATTTGGTTTACAATGTTCCTCTACCAATCACCCTGTTCTTGAGCTACCTCGTTCAATCAAGCTCAATGTCAAACACATTGATTACAGTTCCCAAACCCTTCAGCTATATGATCCTTCTGGCTGCCTCTCTCTGCATCTCCCAAACCTCACTCTTCCTCCTCCTTCCCCTTTCCAGCTCAAAGCCAGCTCGTCTCTTGATGTTGATGACTTTACCGTCTTCAATTGCTCACAGCCGAAAAGCTCCAATATTTATGTGAAATTAATCTCGACGTGCCTCAGCAGCTCTACCTATAAAGTATATGCCATTTCATCAAGTGCACCCATCAGACAAATTCTCTTGTGGTCTTGCACCAAAGTATTTAACATTTCATCCGTCCCAAAACAGATTTTTAGAGCTGGTTACACTATTCAGTTGAAGTGGTCTAATCCTATGTGTAAACGTTGCGAATCAACTGGAAGAAGATGCGGATTCAAGAATAGCAGCATAAGTAATGAAACTGCATGCTTTGAAATAGGTATGATATGCTCTACTTTTGCACAGTCTGAACATGCAAAGCATCCAAATTCTTCTCATGATGAGTTATGTGGGCCTATACTTTGTTCACCCAACAAATTTTTAACCAGCGGGTTAATTGTGGGCTCATTTCTTCTAGCAACAATTATTGTTGCGGTTCATTACATCTTCGATTCTTACAAATCACAGAAAGAAAGCCAGGAAATAATTGACAAATTTTTGAAAGATTATAGAGAACTCAGGCCCATAAGGTATTCTTATGCTGAAATTAAGAGAATTACCAATCAATTTAAAGACAAGTTAGGGGAAGGATCTTTTGGCACTGTGTTCAAAGGAAGAATATCAGCCGAATTCCAAGTTGCAGTGAAAATTCTTTCTAATTCCGAATTAGGAAATGGTGAAGAGTTCATCACTGAAGTTGGAACAATGGCCAAAATCCATCATGTCAACATTATTCGCTTAGTTGGCTTTTGTGCAGATGGCTTTAGAAGAGCGTTGCGGCTTTTACATTGGACTCTTTACTATTCCAAGTTTGGTGATTGCATTTTAGCAGCCAAATTCGTAGTAGAGCCCTCAATTCCTGAGTAA 1281 0.3958 MGTSTVKSFFFICLLLILGFPESVKSQSSCPEPETRCGNHHVRFPFRIIGRQPEECGYPGFGLQCSSTNHPVLELPRSIKLNVKHIDYSSQTLQLYDPSGCLSLHLPNLTLPPPSPFQLKASSSLDVDDFTVFNCSQPKSSNIYVKLISTCLSSSTYKVYAISSSAPIRQILLWSCTKVFNISSVPKQIFRAGYTIQLKWSNPMCKRCESTGRRCGFKNSSISNETACFEIGMICSTFAQSEHAKHPNSSHDELCGPILCSPNKFLTSGLIVGSFLLATIIVAVHYIFDSYKSQKESQEIIDKFLKDYRELRPIRYSYAEIKRITNQFKDKLGEGSFGTVFKGRISAEFQVAVKILSNSELGNGEEFITEVGTMAKIHHVNIIRLVGFCADGFRRALRLLHWTLYYSKFGDCILAAKFVVEPSIPE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1216 426 Gene3D Phosphorylase Kinase; domain 1 299 398 - -
Lele56g1216 426 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Lele56g1216 426 SUPERFAMILY Protein kinase-like (PK-like) 313 394 IPR011009 -
Lele56g1216 426 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 290 - -
Lele56g1216 426 ProSiteProfiles Protein kinase domain profile. 326 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele56g1216 426 Pfam Protein tyrosine and serine/threonine kinase 328 391 IPR001245 GO:0004672|GO:0006468
Lele56g1216 426 Pfam Wall-associated receptor kinase galacturonan-binding 30 97 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1216 Lele-ChrLele56 15590749 15593099 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1216 33 397 Receptor kinase-like Gene Family AT1G66910 26.601 2.21e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lele56g1216 PK_Tyr_Ser-Thr 8.9e-12 CL0016