Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g1203 ATGGGGAGGGCTCCTTGCTGCGACAAAGCCAACGTGAAGAAAGGGCCATGGTCACCGGAGGAAGACGCAAAACTCAAGGCTTACATCGAACAGCGCGGCACCGGCGGCAACTGGATCGCGCTCCCTCGCAAGATAGGACTTAAGAGATGTGGGAAAAGCTGTCGTCTGAGATGGTTGAATTATCTTCGCCCCAACATCAAGCATGGTGGTTTCTCCGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCTATAATAGCGGCACAATTACCAGGAAGAACCGACAATGATATAAAGAACTACTGGAACACGAGGCTAAAGAAGAAACTTCTGGGGAAGCAGCGTAAGCAACAAGAAGCCCAAGCTGGCCGAGCTAACAACACGTTCAAGCAACAAGAACTTAAGATCAGACAGACGAATAATTTGGTGCTCATGAACCAAACTCCTAATTCTTTGTCTACTACGCATCAGCCTTCGATCCCAGAACCCTACGATCTCAACAATCTAAGAAACATTTTAACTAAACTTGGTGGAAGATTTTCCCCTGATCATCATCTCCCTCATCAATACCCATATGAATGTGACCCTTTCTTCTTCCCGCCACAAGACCAGCCATCATATCCAGTTCCAAACTCATCAGTGATAAACGATTGCAGTACTTCGAACGTATTTGAAGGATTTCAAATTGAAAACTTGCAGAGTAATGATTTGAGCCAGATGGGGTGTGTGAACACTACCACTCAGCAATTGTATGGATTTCAGAGTTATAACAGTGGAGTAATGGAGTCGTCGTCGACGGTCACCACCACTTCAACGGAAAGTAGCAGTTGGACAGACATGAGCTCTCTGCTAAATTACTCTCCTAACAACATGGTTTCCGAATACCAAGAAATAATGTTGCCTCAAGATGTTGCTTTCGATGAGCCTGCACCTGCCTACTTTGGATGCAATAACTTTGAATTTTGTACTACTCCTTACATCAAACCCTAA 1011 0.4471 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQRGTGGNWIALPRKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKQQEAQAGRANNTFKQQELKIRQTNNLVLMNQTPNSLSTTHQPSIPEPYDLNNLRNILTKLGGRFSPDHHLPHQYPYECDPFFFPPQDQPSYPVPNSSVINDCSTSNVFEGFQIENLQSNDLSQMGCVNTTTQQLYGFQSYNSGVMESSSTVTTTSTESSSWTDMSSLLNYSPNNMVSEYQEIMLPQDVAFDEPAPAYFGCNNFEFCTTPYIKP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g1203 336 CDD SANT 71 113 IPR001005 -
Lele56g1203 336 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele56g1203 336 FunFam Transcription factor MYB36 70 140 - -
Lele56g1203 336 FunFam Transcription factor RAX3 7 68 - -
Lele56g1203 336 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele56g1203 336 CDD SANT 16 62 IPR001005 -
Lele56g1203 336 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele56g1203 336 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele56g1203 336 SMART sant 13 64 IPR001005 -
Lele56g1203 336 SMART sant 67 115 IPR001005 -
Lele56g1203 336 Gene3D - 70 145 - -
Lele56g1203 336 Gene3D - 7 68 - -
Lele56g1203 336 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele56g1203 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lele56g1203 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele56g1203 336 PANTHER OS09G0431300 PROTEIN 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g1203 Lele-ChrLele56 15488682 15489911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele56g1203 1 291 MYB Transcription Factor Family AT3G49690 48.534 3.74e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele56g1203 Myb_DNA-binding 3.9e-12 CL0123